Basic Information
Locus ID:
Oco18G012210
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Protein kinase domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG18 | 15980660 | 15988028 | + | Oco18G012210 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.73 | 78,975.13 Da | 51.27 | 82.64 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 420 | 668 | 7.2E-36 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 394 | 668 | 6.61E-61 | IPR011009 |
| SUPERFAMILY | SSF52402 | Adenine nucleotide alpha hydrolases-like | 112 | 212 | 3.27E-5 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 489 | 673 | 8.7E-38 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 389 | 488 | 3.6E-24 | - |
| SMART | SM00220 | serkin_6 | 416 | 680 | 7.4E-19 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 416 | 684 | 31.820593 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 531 | 543 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 362 | 390 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 42 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 17 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 25 | 42 | - | - |
| Coils | Coil | Coil | 337 | 371 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G26150.1 | protein kinase family protein. | 0 |
| RefSeq | XP_052167894.1 | U-box domain-containing protein 33-like isoform X1 [Oryza glaberrima] | 0 |
| Q5WA76 | U-box domain-containing protein 70 OS=Oryza sativa subsp. japonica OX=39947 GN=PUB70 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6G1DG87 | Protein kinase domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_011148 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | AH03.1125, CH03.1448 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0525140, gene-QOZ80_6BG0478790 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0495260.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_029939, gene-QYE76_038238, gene-QYE76_038250 |
| Poaceae | Oryza coarctata | 2 | Oco17G012280, Oco18G012210 |
| Poaceae | Oryza sativa | 1 | LOC_Os09g39650.2 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G134700 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr11G013760, Chr14G008300, Chr14G008310, Chr21G008480 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G471300 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC4BG063380, gene_TRIDC5AG044100 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS5A02G294800.1, TraesCS5B02G294100.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb086660_P001, Zm00001eb087310_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-53373, nbis-gene-53374 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g29843 |