Basic Information
Locus ID:
Oco18G010860
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
BRIGHT, ARID (A/T-rich interaction domain) domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG18 | 14896597 | 14899096 | - | Oco18G010860 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.99 | 29,444.28 Da | 65.22 | 60.77 | -0.73 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01390 | HMGB-UBF_HMG-box | 178 | 238 | 6.35228E-11 | - |
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 8 | 72 | 5.2E-11 | IPR001606 |
| Pfam | PF09011 | HMG-box domain | 175 | 230 | 5.1E-6 | IPR009071 |
| SUPERFAMILY | SSF46774 | ARID-like | 18 | 83 | 2.09E-18 | IPR036431 |
| SUPERFAMILY | SSF47095 | HMG-box | 166 | 238 | 5.37E-12 | IPR036910 |
| Gene3D | G3DSA:1.10.150.60 | - | 7 | 82 | 1.3E-16 | IPR036431 |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 158 | 244 | 1.1E-8 | IPR036910 |
| SMART | SM00501 | bright_3 | 2 | 77 | 2.9E-8 | IPR001606 |
| SMART | SM01014 | ARID_2 | 1 | 72 | 4.7E-6 | - |
| ProSiteProfiles | PS50118 | HMG boxes A and B DNA-binding domains profile. | 178 | 245 | 8.600964 | IPR009071 |
| ProSiteProfiles | PS51011 | ARID domain profile. | 1 | 76 | 16.689905 | IPR001606 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 149 | 203 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 184 | 203 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 239 | 259 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04880.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_025876137.1 | high mobility group B protein 9 isoform X2 [Oryza sativa Japonica Group] | 0 |
| Q9MAT6 | High mobility group B protein 15 OS=Arabidopsis thaliana OX=3702 GN=HMGB15 PE=2 SV=1 | 0 | |
| TrEMBL | Q7XXN0 | Glutathione S-transferase GST 16-like protein OS=Oryza sativa subsp. japonica OX=39947 GN=OsJ_30204 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology