halophFGD

Basic Information

Locus ID: Oco18G009960

Species & Taxonomic ID: Oryza coarctata & 77588

Genome Assembly: GCA_030770085.1

Description: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
LG18	13993009	13997564	+	Oco18G009960

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.03	25,461.17 Da	65.70	89.22	0.31

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID

Best hit

Source	Best Hit ID	Description
TAIR	AT1G21320.5	-
RefSeq	XP_006661461.2	RNA-binding protein 2 [Oryza brachyantha]
Swiss-Prot	Q6JB11	Protein MATERNALLY EXPRESSED GENE 5 OS=Zea mays OX=4577 GN=MEG5 PE=2 SV=1
TrEMBL	J3MZE4	RRM domain-containing protein OS=Oryza brachyantha OX=4533 GN=102707521 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg10275, jg13851, jg2158, jg4587
Aizoaceae	Mesembryanthemum crystallinum	3	gene_13150, gene_3336, gene_999
Amaranthaceae	Atriplex hortensis	3	Ah005333, Ah018564, Ah024364
Amaranthaceae	Beta vulgaris	3	BVRB_1g011240, BVRB_3g051310, BVRB_4g080290
Amaranthaceae	Salicornia bigelovii	6	Sbi_jg15012, Sbi_jg17551, Sbi_jg38919, Sbi_jg54199 ... Sbi_jg55833, Sbi_jg62199
Amaranthaceae	Salicornia europaea	3	Seu_jg10782, Seu_jg26333, Seu_jg800
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00007429, GOSA_00017803, GOSA_00021044
Amaranthaceae	Suaeda glauca	8	Sgl01269, Sgl06353, Sgl10170, Sgl15278, Sgl15319, Sgl15373 ... Sgl24130, Sgl29313
Amaranthaceae	Chenopodium album	9	gene:ENSEOMG00000003277, gene:ENSEOMG00000007929 ... gene:ENSEOMG00000012665, gene:ENSEOMG00000029256, gene:ENSEOMG00000029591, gene:ENSEOMG00000033393, gene:ENSEOMG00000041872, gene:ENSEOMG00000045308, gene:ENSEOMG00000049533
Amaranthaceae	Chenopodium quinoa	6	CQ.Regalona.r1.1AG0014220, CQ.Regalona.r1.1BG0011830 ... CQ.Regalona.r1.3AG0005650, CQ.Regalona.r1.3BG0005750, CQ.Regalona.r1.4AG0004360, CQ.Regalona.r1.4BG0004490
Anacardiaceae	Pistacia vera	3	pistato.v30038060, pistato.v30165310, pistato.v30261260
Apiaceae	Apium graveolens	4	Ag10G02498, Ag3G01128, Ag4G02635, Ag9G02592
Arecaceae	Cocos nucifera	4	COCNU_02G000950, COCNU_07G006760, COCNU_08G006600 ... COCNU_10G004940
Arecaceae	Phoenix dactylifera	5	gene-LOC103707719, gene-LOC103709601, gene-LOC103716719 ... gene-LOC103718657, gene-LOC113463554
Asparagaceae	Asparagus officinalis	3	AsparagusV1_04.756.V1.1, AsparagusV1_08.418.V1.1 ... AsparagusV1_08.532.V1.1
Asteraceae	Flaveria trinervia	4	Ftri16G31281, Ftri4G20935, Ftri8G16409, Ftri8G28906
Brassicaceae	Arabidopsis thaliana	2	AT1G21320.1, AT1G76940.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10008603m.g.v1.0, Thhalv10019060m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp1g18870.v2.2, Sp5g32060.v2.2
Brassicaceae	Brassica nigra	6	BniB03g009090.2N, BniB03g009110.2N, BniB03g009140.2N ... BniB03g029590.2N, BniB03g056020.2N, BniB04g035900.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq03G1956, Ceq03G1957
Casuarinaceae	Casuarina glauca	3	Cgl03G2102, Cgl03G2104, Cgl09G1785
Cymodoceaceae	Cymodocea nodosa	4	gene.Cymno01g12730, gene.Cymno06g02540, gene.Cymno09g02230 ... gene.Cymno11g08950
Dunaliellaceae	Dunaliella salina	1	Dusal.0053s00027.v1.0
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate05g01860, gene.Thate06g15790, gene.Thate08g17870
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG05.1213, evm.TU.LG06.730, evm.TU.LG07.657
Plantaginaceae	Plantago ovata	3	Pov_00013457, Pov_00022997, Pov_00041184
Plumbaginaceae	Limonium bicolor	2	Lb2G12756, Lb3G21045
Poaceae	Echinochloa crus-galli	11	AH06.246, AH06.470, AH08.2287, BH06.148, BH06.162, BH06.351 ... BH08.2428, CH06.143, CH06.342, CH08.2626, CH08.2627
Poaceae	Eleusine coracana subsp. coracana	7	gene-QOZ80_6AG0506880, gene-QOZ80_6AG0508760 ... gene-QOZ80_6AG0528800, gene-QOZ80_6BG0458560, gene-QOZ80_6BG0460920, gene-QOZ80_8AG0639740, gene-QOZ80_8BG0668350
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.7HG0642770.1, HORVU.MOREX.r3.7HG0650310.1 ... HORVU.MOREX.r3.7HG0687080.2
Poaceae	Lolium multiflorum	4	gene-QYE76_027559, gene-QYE76_027870, gene-QYE76_030513 ... gene-QYE76_030528
Poaceae	Oryza coarctata	8	Oco11G002260, Oco12G001130, Oco12G002250, Oco15G014040 ... Oco16G013230, Oco17G009960, Oco18G009960, Oco18G009980
Poaceae	Oryza sativa	5	LOC_Os06g03690.2, LOC_Os06g05530.1, LOC_Os08g43360.1 ... LOC_Os09g35830.4, LOC_Os09g35850.1
Poaceae	Paspalum vaginatum	3	gene-BS78_07G217800, gene-BS78_10G019600 ... gene-BS78_10G041500
Poaceae	Puccinellia tenuiflora	5	Pt_Chr0401910, Pt_Chr0401931, Pt_Chr0402216, Pt_Chr0403459 ... Pt_Chr0403476
Poaceae	Sporobolus alterniflorus	9	Chr0G015670, Chr11G022980, Chr11G024080, Chr14G001760 ... Chr16G018710, Chr17G017740, Chr20G002680, Chr21G000880, Chr29G000830
Poaceae	Thinopyrum elongatum	3	Tel7E01G124800, Tel7E01G199600, Tel7E01G472700
Poaceae	Triticum dicoccoides	6	gene_TRIDC4AG057500, gene_TRIDC4AG063820 ... gene_TRIDC7AG006100, gene_TRIDC7AG011410, gene_TRIDC7AG035480, gene_TRIDC7BG026620
Poaceae	Triticum aestivum	9	TraesCS4A02G396800.2, TraesCS4A02G432400.2 ... TraesCS7A02G057900.1, TraesCS7A02G096900.1, TraesCS7A02G270300.1, TraesCS7B02G168600.1, TraesCS7D02G053000.1, TraesCS7D02G093000.1, TraesCS7D02G270800.1
Poaceae	Zea mays	2	Zm00001eb202590_P001, Zm00001eb378600_P001
Poaceae	Zoysia japonica	4	nbis-gene-17594, nbis-gene-40401, nbis-gene-42802 ... nbis-gene-51176
Poaceae	Zoysia macrostachya	4	Zma_g23382, Zma_g24483, Zma_g29103, Zma_g31264
Portulacaceae	Portulaca oleracea	6	evm.TU.LG01.1590, evm.TU.LG01.498, evm.TU.LG04.1383 ... evm.TU.LG04.262, evm.TU.LG05.1904, evm.TU.LG14.838
Posidoniaceae	Posidonia oceanica	3	gene.Posoc03g23730, gene.Posoc06g11200, gene.Posoc08g01580
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_2_RagTag.1627, evm.TU.Scaffold_7_RagTag.1213 ... evm.TU.Scaffold_8_RagTag.546
Rhizophoraceae	Carallia pectinifolia	4	nbisL1-mrna-18623, nbisL1-mrna-25879, nbisL1-mrna-3585 ... nbisL1-mrna-9715
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-1088, nbisL1-mrna-11280, nbisL1-mrna-13023
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-13189, nbisL1-mrna-19014
Rhizophoraceae	Kandelia candel	4	evm.TU.utg000002l.369, evm.TU.utg000008l.713 ... evm.TU.utg000009l.329, evm.TU.utg000018l.647
Rhizophoraceae	Kandelia obovata	3	Maker00002909, Maker00005740, Maker00011790
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-2759, nbisL1-mrna-8933, nbisL1-mrna-9641
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-18417, nbisL1-mrna-18632, nbisL1-mrna-21783
Salicaceae	Populus euphratica	5	populus_peu12617, populus_peu27985, populus_peu29433 ... populus_peu32536, populus_peu37057
Solanaceae	Lycium barbarum	3	gene-LOC132627289, gene-LOC132632124, gene-LOC132639733
Solanaceae	Solanum chilense	4	SOLCI003147000, SOLCI003530900, SOLCI003531000 ... SOLCI005051100
Solanaceae	Solanum pennellii	10	gene-LOC107012415, gene-LOC107015693, gene-LOC107016977 ... gene-LOC107021897, gene-LOC107021898, gene-LOC107021899, gene-LOC107021901, gene-LOC107022889, gene-LOC107023787, gene-LOC114073857
Tamaricaceae	Reaumuria soongarica	4	STRG.8119_chr05_-, STRG.8149_chr05_+, gene_10768, gene_5058
Tamaricaceae	Tamarix chinensis	3	TC06G2670, TC08G1317, TC11G1401
Zosteraceae	Zostera marina	2	Zosma05g24870.v3.1, Zosma05g33850.v3.1