Basic Information
Locus ID:
Oco18G009310
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Short Name:
CPK24
Description:
EF hand
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG18 | 13470884 | 13474001 | - | Oco18G009310 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.54 | 63,187.48 Da | 42.17 | 77.03 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05117 | STKc_CAMK | 90 | 354 | 1.18625E-125 | - |
| CDD | cd00051 | EFh | 482 | 541 | 2.32889E-18 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 481 | 541 | 9.5E-15 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 408 | 467 | 2.3E-8 | IPR002048 |
| Pfam | PF00069 | Protein kinase domain | 91 | 355 | 2.4E-67 | IPR000719 |
| SUPERFAMILY | SSF47473 | EF-hand | 397 | 554 | 3.02E-41 | IPR011992 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 88 | 365 | 9.04E-80 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 93 | 182 | 3.7E-23 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 183 | 363 | 2.7E-60 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 364 | 544 | 1.3E-46 | - |
| SMART | SM00220 | serkin_6 | 91 | 355 | 1.5E-88 | IPR000719 |
| SMART | SM00054 | efh_1 | 443 | 471 | 0.33 | IPR002048 |
| SMART | SM00054 | efh_1 | 515 | 543 | 2.9E-6 | IPR002048 |
| SMART | SM00054 | efh_1 | 407 | 435 | 1.9 | IPR002048 |
| SMART | SM00054 | efh_1 | 479 | 507 | 0.0081 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 511 | 546 | 14.178661 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 403 | 438 | 12.895472 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 439 | 474 | 9.966455 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 475 | 510 | 12.78389 | IPR002048 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 91 | 355 | 47.170116 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 217 | 229 | - | IPR008271 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 452 | 464 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 488 | 500 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 524 | 536 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 416 | 428 | - | IPR018247 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 97 | 120 | - | IPR017441 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G57530.1 | calcium-dependent protein kinase 32. Calcium-dependent Protein Kinase. ABA signaling component that regulates the ABA-responsive gene expression via ABF4. AtCPK32 has autophosphorylation activity and can phosphorylate ABF4 in vitro | 0 |
| RefSeq | XP_052168919.1 | calcium-dependent protein kinase 22 [Oryza glaberrima] | 0 |
| Q69IM9 | Calcium-dependent protein kinase 22 OS=Oryza sativa subsp. japonica OX=39947 GN=CPK22 PE=3 SV=1 | 0 | |
| TrEMBL | A0A0E0ETT1 | Calcium-dependent protein kinase 29 OS=Oryza meridionalis OX=40149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology