Basic Information
Locus ID:
Oco18G009200
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG18 | 13382998 | 13386679 | + | Oco18G009200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.38 | 43,566.86 Da | 53.48 | 52.11 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16448 | RING-H2 | 20 | 66 | 4.91231E-8 | - |
| Pfam | PF13639 | Ring finger domain | 20 | 66 | 1.9E-7 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 11 | 68 | 5.14E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 4 | 71 | 2.7E-11 | IPR013083 |
| SMART | SM00184 | ring_2 | 20 | 65 | 4.6E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 20 | 66 | 11.677863 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G47700.2 | - | 0 |
| RefSeq | XP_006661422.3 | E3 ubiquitin-protein ligase RFI2-like [Oryza brachyantha] | 0 |
| Q5Z8R1 | E3 ubiquitin-protein ligase IPI1 OS=Oryza sativa subsp. japonica OX=39947 GN=IPI1 PE=1 SV=1 | 0 | |
| TrEMBL | J3MZ42 | RING-type domain-containing protein OS=Oryza brachyantha OX=4533 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Arecaceae | Cocos nucifera | 3 | scaffold000125G000020, scaffold000125G000030 ... |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103705956, gene-LOC103715364 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_10.361.V1.1 |
| Poaceae | Echinochloa crus-galli | 3 | AH08.2226, BH08.2355, CH08.2530 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_8AG0638330, gene-QOZ80_8BG0667600 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0685620.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_030368 |
| Poaceae | Oryza coarctata | 4 | Oco15G009600, Oco16G012820, Oco17G009120, Oco18G009200 |
| Poaceae | Oryza sativa | 2 | LOC_Os08g42640.1, LOC_Os09g33670.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_07G208900, gene-BS78_K272500 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0403540 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr16G018230, Chr17G017450 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G464300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG035110, gene_TRIDC7BG025840 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G268500.1, TraesCS7B02G163800.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb037170_P001, Zm00001eb198260_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-42747 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g23351 |