Basic Information
Locus ID:
Oco18G008840
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Prokaryotic RING finger family 4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG18 | 13083917 | 13084714 | - | Oco18G008840 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.86 | 21,988.53 Da | 53.46 | 67.38 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16449 | RING-HC | 158 | 195 | 9.11891E-8 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 156 | 202 | 1.7E-12 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 157 | 202 | 2.21E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 125 | 206 | 7.3E-13 | IPR013083 |
| SMART | SM00184 | ring_2 | 158 | 195 | 3.0E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 158 | 196 | 11.427062 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 173 | 182 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 28 | 43 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 63 | 104 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 21 | 47 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G25030.3 | - | 0 |
| RefSeq | XP_040383686.1 | uncharacterized protein LOC121055354 [Oryza brachyantha] | 0 |
| TrEMBL | A0A0E0E8P1 | RING-type domain-containing protein OS=Oryza meridionalis OX=40149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology