Basic Information
Locus ID:
Oco18G007080
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG18 | 11338584 | 11348231 | - | Oco18G007080 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.55 | 101,467.03 Da | 57.60 | 67.72 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02661 | Peptidase_C19E | 376 | 678 | 4.89983E-131 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 375 | 677 | 1.4E-49 | IPR001394 |
| Pfam | PF01753 | MYND finger | 111 | 148 | 2.6E-7 | IPR002893 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 371 | 683 | 7.26E-87 | IPR038765 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 108 | 150 | 2.79E-10 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 102 | 150 | 6.1E-10 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 368 | 691 | 2.6E-95 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 375 | 680 | 53.435902 | IPR028889 |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 111 | 148 | 11.395257 | IPR002893 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 376 | 391 | - | IPR018200 |
| ProSitePatterns | PS01360 | Zinc finger MYND-type signature. | 111 | 148 | - | IPR002893 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 758 | 786 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 869 | 893 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 265 | 324 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 265 | 326 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 869 | 895 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G65450.1 | ubiquitin-specific protease 17. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_052168441.1 | ubiquitin carboxyl-terminal hydrolase 16-like [Oryza glaberrima] | 0 |
| Q9FKP5 | Ubiquitin carboxyl-terminal hydrolase 17 OS=Arabidopsis thaliana OX=3702 GN=UBP17 PE=2 SV=1 | 0 | |
| TrEMBL | B8BCM6 | Ubiquitin carboxyl-terminal hydrolase 17 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_31685 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology