Basic Information
Locus ID:
Oco18G006450
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Protein of unknown function (DUF1644)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG18 | 10714670 | 10718035 | - | Oco18G006450 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.48 | 26,760.35 Da | 65.04 | 68.58 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07800 | Protein of unknown function (DUF1644) | 102 | 189 | 1.4E-30 | IPR012866 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 45 | 134 | 1.7E-5 | IPR013083 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G68140.2 | Protein of unknown function (DUF1644). | 0 |
| RefSeq | XP_006660678.1 | uncharacterized protein LOC102706780 [Oryza brachyantha] | 0 |
| TrEMBL | J3MY06 | RING-type domain-containing protein OS=Oryza brachyantha OX=4533 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0537030, gene-QOZ80_6BG0490360 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0485840.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_005592 |
| Poaceae | Oryza coarctata | 2 | Oco17G006270, Oco18G006450 |
| Poaceae | Oryza sativa | 1 | LOC_Os09g27860.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G200900 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr14G015000, Chr21G014050 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G379600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG037150, gene_TRIDC5BG039130 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G234600.1.cds1, TraesCS5B02G233100.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb100600_P001 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g32648 |