Basic Information
Locus ID:
Oco18G006240
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG18 | 10496696 | 10497706 | + | Oco18G006240 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.79 | 35,743.76 Da | 98.69 | 70.62 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 218 | 259 | 3.7E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 214 | 265 | 4.2E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 188 | 264 | 2.9E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 218 | 258 | 2.0E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 218 | 259 | 13.064645 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 41 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 26 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G46620.1 | zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_040383271.1 | formin-like protein 3 [Oryza brachyantha] | 0 |
| Q9SNB6 | E3 ubiquitin-protein ligase RDUF1 OS=Arabidopsis thaliana OX=3702 GN=RDUF1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6G1EA15 | RING-type domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_003080 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0485230.1.CDS1 |
| Poaceae | Lolium multiflorum | 5 | gene-QYE76_005517, gene-QYE76_005518, gene-QYE76_005557 ... |
| Poaceae | Oryza coarctata | 1 | Oco18G006240 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0702033, Pt_Chr0702097 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC5AG036790 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G232200.1.cds1, TraesCS5B02G230500.1.cds1 ... |