Basic Information
Locus ID:
Oco18G005680
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
In Between Ring fingers
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG18 | 9950108 | 9952948 | - | Oco18G005680 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.67 | 76,284.36 Da | 58.04 | 66.31 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13445 | RING-type zinc-finger | 509 | 554 | 8.3E-6 | IPR027370 |
| SUPERFAMILY | SSF57850 | RING/U-box | 656 | 701 | 7.06E-10 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 505 | 560 | 1.99E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 504 | 591 | 1.9E-19 | IPR013083 |
| Gene3D | G3DSA:1.20.120.1750 | - | 650 | 715 | 2.2E-10 | - |
| SMART | SM00647 | ibrneu5 | 649 | 711 | 0.05 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 581 | 648 | 0.0036 | IPR002867 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 509 | 554 | 10.379599 | IPR001841 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 505 | 720 | 23.732817 | IPR044066 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 527 | 536 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 43 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19670.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_040383268.1 | uncharacterized protein LOC107304896 [Oryza brachyantha] | 0 |
| F4ITM1 | E3 ubiquitin-protein ligase RSL1 OS=Arabidopsis thaliana OX=3702 GN=RSL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0E0M1L3 | RBR-type E3 ubiquitin transferase OS=Oryza punctata OX=4537 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 4 | AH03.2028, BH03.2377, CH03.2352, CH03.2353 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0481110.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_005352, gene-QYE76_005438, gene-QYE76_015362 |
| Poaceae | Oryza coarctata | 2 | Oco17G005570, Oco18G005680 |
| Poaceae | Oryza sativa | 1 | LOC_Os09g26470.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G192700 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr10G009320, Chr10G009330 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G354700 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG034770, gene_TRIDC5BG036480 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G215600.1, TraesCS5B02G214100.1 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-19790 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g32591 |