Basic Information
Locus ID:
Oco18G004940
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
CAF1 family ribonuclease
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG18 | 9007773 | 9009598 | + | Oco18G004940 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.20 | 31,243.13 Da | 25.53 | 90.89 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04857 | CAF1 family ribonuclease | 160 | 243 | 2.2E-6 | IPR006941 |
| Pfam | PF04857 | CAF1 family ribonuclease | 17 | 139 | 1.5E-7 | IPR006941 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 14 | 268 | 1.52E-87 | IPR012337 |
| Gene3D | G3DSA:3.30.420.10 | - | 1 | 272 | 2.2E-96 | IPR036397 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32070.1 | Polynucleotidyl transferase, ribonuclease H-like superfamily protein. | 0 |
| RefSeq | XP_015611819.1 | probable CCR4-associated factor 1 homolog 7 [Oryza sativa Japonica Group] | 0 |
| Q9SKZ2 | Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana OX=3702 GN=CAF1-7 PE=2 SV=2 | 0 | |
| TrEMBL | A0A6G1DGD0 | poly(A)-specific ribonuclease OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_008324 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology