halophFGD

Basic Information

Locus ID: Oco18G004630

Species & Taxonomic ID: Oryza coarctata & 77588

Genome Assembly: GCA_030770085.1

Description: zinc finger, C3HC4 type domain containing protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
LG18	8655287	8663938	+	Oco18G004630

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.74	52,550.64 Da	34.62	108.96	0.43

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF10269	Transmembrane Fragile-X-F protein	63	284	7.6E-64	IPR019396
Pfam	PF13920	Zinc finger, C3HC4 type (RING finger)	410	452	8.9E-9	-
Gene3D	G3DSA:3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	386	457	5.8E-12	IPR013083
ProSiteProfiles	PS50089	Zinc finger RING-type profile.	412	447	10.320587	IPR001841
Coils	Coil	Coil	388	408	-	-

Best hit

Source	Best Hit ID	Description
TAIR	AT1G18470.1	Transmembrane Fragile-X-F-associated protein.
RefSeq	XP_006660615.3	uncharacterized protein LOC102710726 [Oryza brachyantha]
Swiss-Prot	O08863	Baculoviral IAP repeat-containing protein 3 OS=Mus musculus OX=10090 GN=Birc3 PE=1 SV=2
TrEMBL	J3MXC8	RING-type domain-containing protein OS=Oryza brachyantha OX=4533 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg25663, jg34903, jg34904, jg9188
Aizoaceae	Mesembryanthemum crystallinum	1	gene_19745
Amaranthaceae	Atriplex hortensis	1	Ah001445
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg30896, Sbi_jg58382
Amaranthaceae	Salicornia europaea	1	Seu_jg28260
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00004839
Amaranthaceae	Suaeda glauca	3	Sgl54925, Sgl60181, Sgl60182
Amaranthaceae	Chenopodium album	3	gene:ENSEOMG00000006978, gene:ENSEOMG00000021305 ... gene:ENSEOMG00000027147
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.5AG0018410, CQ.Regalona.r1.5BG0019580
Anacardiaceae	Pistacia vera	2	pistato.v30146090, pistato.v30225770
Apiaceae	Apium graveolens	2	Ag1G01548, Ag3G00938
Arecaceae	Cocos nucifera	4	COCNU_03G008410, scaffold019532G000010 ... scaffold019532G000020, scaffold019532G000030
Arecaceae	Phoenix dactylifera	2	gene-LOC103701851, gene-LOC103721407
Asparagaceae	Asparagus officinalis	2	AsparagusV1_03.1423.V1.1, AsparagusV1_07.3685.V1.1
Asteraceae	Flaveria trinervia	2	Ftri16G29246, Ftri18G01929
Brassicaceae	Arabidopsis thaliana	3	AT1G18470.1, AT1G68820.1, AT1G73950.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10007552m.g.v1.0, Thhalv10018496m.g.v1.0 ... Thhalv10018499m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp1g16410.v2.2, Sp5g23930.v2.2, Sp5g29150.v2.2
Brassicaceae	Brassica nigra	7	BniB03g007600.2N, BniB03g028040.2N, BniB03g046190.2N ... BniB03g052330.2N, BniB04g032890.2N, BniB05g065540.2N, BniB05g065570.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq03G2029, Ceq03G2391
Casuarinaceae	Casuarina glauca	2	Cgl03G2168, Cgl03G2528
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno09g02800
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate05g04310
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG03.499, evm.TU.LG10.425
Plantaginaceae	Plantago ovata	2	Pov_00009030, Pov_00019336
Plumbaginaceae	Limonium bicolor	2	Lb7G34016, Lb7G34017
Poaceae	Echinochloa crus-galli	6	AH01.897, AH03.1874, BH01.1025, BH03.2041, CH01.1076 ... CH03.2227
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_3AG0219520, gene-QOZ80_3BG0264760 ... gene-QOZ80_6AG0534830, gene-QOZ80_6BG0488020
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.4HG0336680.1, HORVU.MOREX.r3.5HG0479700.1
Poaceae	Lolium multiflorum	3	gene-QYE76_005102, gene-QYE76_017385, gene-QYE76_027240
Poaceae	Oryza coarctata	4	Oco05G021330, Oco06G022130, Oco17G004570, Oco18G004630
Poaceae	Oryza sativa	1	LOC_Os03g49900.1
Poaceae	Paspalum vaginatum	2	gene-BS78_01G109900, gene-BS78_02G179700
Poaceae	Puccinellia tenuiflora	3	Pt_Chr0104784, Pt_Chr0502657, Pt_Chr0702227
Poaceae	Sporobolus alterniflorus	5	Chr01G007340, Chr04G026740, Chr07G025730, Chr12G030140 ... Chr14G013620
Poaceae	Thinopyrum elongatum	2	Tel4E01G077800, Tel5E01G343700
Poaceae	Triticum dicoccoides	5	gene_TRIDC4AG042240, gene_TRIDC4BG006730 ... gene_TRIDC5AG033340, gene_TRIDC5AG033350, gene_TRIDC5BG035240
Poaceae	Triticum aestivum	6	TraesCS4A02G271200.1, TraesCS4B02G042900.1 ... TraesCS4D02G040200.2, TraesCS5A02G207100.1, TraesCS5B02G205500.1, TraesCS5D02G213300.2
Poaceae	Zea mays	3	Zm00001eb054460_P001, Zm00001eb216620_P001 ... Zm00001eb312350_P001
Poaceae	Zoysia japonica	3	nbis-gene-14783, nbis-gene-15884, nbis-gene-20012
Poaceae	Zoysia macrostachya	2	Zma_g2978, Zma_g32433
Portulacaceae	Portulaca oleracea	3	evm.TU.LG01.2715, evm.TU.LG02.131, evm.TU.LG09.1368
Posidoniaceae	Posidonia oceanica	2	gene.Posoc02g31360, gene.Posoc08g00170
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_17_RagTag.944, evm.TU.Scaffold_4_RagTag.784
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-23672, nbisL1-mrna-28576
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-21419, nbisL1-mrna-984
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-1593, nbisL1-mrna-21920
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000008l.509, evm.TU.utg000013l.530
Rhizophoraceae	Kandelia obovata	2	Maker00001342, Maker00004468
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-10923, nbisL1-mrna-14396
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-19275, nbisL1-mrna-23116
Salicaceae	Populus euphratica	5	populus_peu07021, populus_peu09320, populus_peu20980 ... populus_peu28374, populus_peu29843
Solanaceae	Lycium barbarum	2	gene-LOC132633301, gene-LOC132641830
Solanaceae	Solanum chilense	2	SOLCI002192600, SOLCI006254700
Solanaceae	Solanum pennellii	2	gene-LOC107014974, gene-LOC107018509
Tamaricaceae	Reaumuria soongarica	1	gene_15962
Tamaricaceae	Tamarix chinensis	2	TC09G1363, TC09G1544
Zosteraceae	Zostera marina	2	Zosma03g35440.v3.1, Zosma06g09610.v3.1