Basic Information
Locus ID:
Oco18G004490
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
XPC-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG18 | 8469245 | 8474079 | + | Oco18G004490 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.45 | 41,680.16 Da | 52.20 | 83.94 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01805 | Ubl_Rad23 | 1 | 74 | 1.379E-30 | - |
| Pfam | PF00240 | Ubiquitin family | 3 | 76 | 7.2E-17 | IPR000626 |
| Pfam | PF09280 | XPC-binding domain | 261 | 317 | 2.3E-20 | IPR015360 |
| Pfam | PF00627 | UBA/TS-N domain | 158 | 195 | 9.6E-14 | IPR015940 |
| Pfam | PF00627 | UBA/TS-N domain | 342 | 378 | 3.7E-9 | IPR015940 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 258 | 323 | 3.4E-20 | IPR036353 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 90 | 9.67E-22 | IPR029071 |
| SUPERFAMILY | SSF46934 | UBA-like | 319 | 390 | 1.37E-13 | IPR009060 |
| SUPERFAMILY | SSF46934 | UBA-like | 154 | 201 | 1.1E-10 | IPR009060 |
| Gene3D | G3DSA:1.10.8.10 | - | 150 | 200 | 4.1E-20 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 76 | 2.6E-24 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 335 | 382 | 2.8E-19 | - |
| Gene3D | G3DSA:1.10.10.540 | - | 250 | 317 | 7.0E-24 | IPR036353 |
| SMART | SM00213 | ubq_7 | 1 | 75 | 1.2E-18 | IPR000626 |
| SMART | SM00727 | CBM | 257 | 302 | 1.0E-7 | IPR006636 |
| SMART | SM00165 | uba_6 | 343 | 380 | 5.5E-8 | IPR015940 |
| SMART | SM00165 | uba_6 | 157 | 197 | 5.0E-5 | IPR015940 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 1 | 385 | 5.7E-106 | IPR004806 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 155 | 198 | 12.281826 | IPR015940 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 79 | 18.954695 | IPR000626 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 341 | 381 | 13.342098 | IPR015940 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 354 | 368 | 7.4E-31 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 337 | 353 | 7.4E-31 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 369 | 384 | 7.4E-31 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 287 | 309 | 7.4E-31 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 82 | 108 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 208 | 235 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 217 | 235 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G38470.1 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_052167843.1 | probable ubiquitin receptor RAD23 [Oryza glaberrima] | 0 |
| Q40742 | Probable ubiquitin receptor RAD23 OS=Oryza sativa subsp. japonica OX=39947 GN=RAD23 PE=1 SV=2 | 0 | |
| TrEMBL | A0A6G1DKK0 | Ubiquitin receptor RAD23 OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_019758 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology