Basic Information
Locus ID:
Oco18G004060
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Bromo adjacent homology domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG18 | 7821940 | 7825655 | + | Oco18G004060 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.02 | 24,743.88 Da | 36.75 | 50.46 | -0.81 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01426 | BAH domain | 23 | 135 | 2.9E-22 | IPR001025 |
| Pfam | PF00628 | PHD-finger | 140 | 188 | 9.2E-10 | IPR019787 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 132 | 193 | 6.64E-20 | IPR011011 |
| Gene3D | G3DSA:2.30.30.490 | - | 1 | 132 | 9.5E-31 | IPR043151 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 133 | 202 | 3.7E-21 | IPR013083 |
| SMART | SM00439 | BAH_4 | 21 | 136 | 6.3E-41 | IPR001025 |
| SMART | SM00249 | PHD_3 | 140 | 187 | 2.1E-9 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 138 | 189 | 9.2052 | IPR019787 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 21 | 136 | 23.439501 | IPR001025 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 141 | 186 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 192 | 216 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G22140.2 | PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein. | 0 |
| RefSeq | XP_006660596.1 | chromatin remodeling protein EBS [Oryza brachyantha] | 0 |
| F4JL28 | Chromatin remodeling protein EBS OS=Arabidopsis thaliana OX=3702 GN=EBS PE=1 SV=1 | 0 | |
| TrEMBL | A0A6G1DRR2 | Chromatin remodeling protein EBS-like OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_036680 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology