Basic Information
Locus ID:
Oco18G003640
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
F-box associated domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG18 | 7336384 | 7340672 | - | Oco18G003640 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.49 | 45,221.70 Da | 49.15 | 82.89 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 17 | 45 | 3.1E-6 | IPR001810 |
| Pfam | PF08268 | F-box associated domain | 205 | 292 | 1.2E-5 | IPR013187 |
| SUPERFAMILY | SSF50965 | Galactose oxidase, central domain | 106 | 335 | 9.15E-6 | IPR011043 |
| SUPERFAMILY | SSF81383 | F-box domain | 15 | 67 | 7.85E-12 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 14 | 65 | 2.6E-7 | - |
| SMART | SM00256 | fbox_2 | 17 | 57 | 0.0091 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 106 | 298 | 8.4E-27 | IPR017451 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G47730.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_015611874.1 | putative F-box protein At2g02030 isoform X1 [Oryza sativa Japonica Group] | 0 |
| Q9SXA0 | Putative F-box protein At1g47730 OS=Arabidopsis thaliana OX=3702 GN=At1g47730 PE=4 SV=1 | 0 | |
| TrEMBL | A0A6G1C1B4 | F-box domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_033371 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology