Basic Information
Locus ID:
Oco18G003020
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Carbohydrate-binding protein of the ER
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG18 | 6599035 | 6608025 | + | Oco18G003020 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.16 | 42,691.96 Da | 42.02 | 82.43 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 168 | 254 | 5.3E-18 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 154 | 358 | 7.02E-53 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 253 | 381 | 2.0E-28 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 153 | 243 | 2.4E-29 | - |
| SMART | SM00220 | serkin_6 | 166 | 356 | 4.2E-11 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 166 | 383 | 18.690107 | IPR000719 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G46330.2 | - | 0 |
| RefSeq | XP_052167765.1 | putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g19230 [Oryza glaberrima] | 0 |
| C0LGW2 | Probable LRR receptor-like serine/threonine-protein kinase PAM74 OS=Arabidopsis thaliana OX=3702 GN=PAM74 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0D3H5U0 | Protein kinase domain-containing protein OS=Oryza barthii OX=65489 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Oryza coarctata | 1 | Oco18G003020 |
| Poaceae | Oryza sativa | 1 | LOC_Os09g18530.1 |
| Poaceae | Triticum aestivum | 1 | TraesCS5B02G186600.1 |