Basic Information
Locus ID:
Oco18G002500
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG18 | 5947237 | 5952135 | - | Oco18G002500 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.51 | 45,924.81 Da | 47.11 | 80.80 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 338 | 379 | 1.8E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 328 | 383 | 6.71E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 323 | 384 | 1.8E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 338 | 378 | 3.7E-6 | IPR001841 |
| SMART | SM00744 | ringv_2 | 337 | 379 | 0.0064 | IPR011016 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 338 | 379 | 12.031935 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 44 | 64 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 158 | 176 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 154 | 176 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 64 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 15 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G32600.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_052168217.1 | E3 ubiquitin-protein ligase At1g63170-like [Oryza glaberrima] | 0 |
| Q8LDB8 | E3 ubiquitin-protein ligase At1g63170 OS=Arabidopsis thaliana OX=3702 GN=At1g63170 PE=2 SV=2 | 0 | |
| TrEMBL | J3MWI2 | RING-type domain-containing protein OS=Oryza brachyantha OX=4533 GN=102710434 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH03.1564, BH03.1741, CH03.1897 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0532250, gene-QOZ80_6BG0485760 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0473540.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_004523, gene-QYE76_017307 |
| Poaceae | Oryza coarctata | 1 | Oco18G002500 |
| Poaceae | Oryza sativa | 1 | LOC_Os09g15430.3 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G151600 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0702624, Pt_Chr0702648 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr10G012030, Chr11G010200, Chr14G012330 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G310000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG029800, gene_TRIDC5BG031490 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G183200.1, TraesCS5B02G181400.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb309900_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-35533 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g32371 |