Basic Information
Locus ID:
Oco18G001440
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Belongs to the SKP1 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG18 | 3912084 | 3912614 | - | Oco18G001440 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.55 | 17,627.58 Da | 40.65 | 84.38 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03931 | Skp1 family, tetramerisation domain | 12 | 70 | 3.6E-24 | IPR016073 |
| Pfam | PF01466 | Skp1 family, dimerisation domain | 114 | 159 | 6.8E-24 | IPR016072 |
| SUPERFAMILY | SSF54695 | POZ domain | 13 | 71 | 1.22E-18 | IPR011333 |
| SUPERFAMILY | SSF81382 | Skp1 dimerisation domain-like | 98 | 159 | 6.15E-16 | IPR036296 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 8 | 162 | 8.6E-46 | IPR011333 |
| SMART | SM00512 | skp1_3 | 11 | 117 | 6.3E-21 | IPR001232 |
| PIRSF | PIRSF028729 | SCF_Skp | 1 | 162 | 2.0E-43 | IPR016897 |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
ko04110 (Cell cycle)
map04110 (Cell cycle)
ko04111 (Cell cycle - yeast)
map04111 (Cell cycle - yeast)
ko04114 (Oocyte meiosis)
map04114 (Oocyte meiosis)
ko04120 (Ubiquitin mediated proteolysis)
map04120 (Ubiquitin mediated proteolysis)
ko04141 (Protein processing in endoplasmic reticulum)
map04141 (Protein processing in endoplasmic reticulum)
ko04310 (Wnt signaling pathway)
map04310 (Wnt signaling pathway)
ko04341 (Hedgehog signaling pathway - fly)
map04341 (Hedgehog signaling pathway - fly)
ko04350 (TGF-beta signaling pathway)
map04350 (TGF-beta signaling pathway)
ko04710 (Circadian rhythm)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G20140.1 | SKP1-like 4. | 0 |
| RefSeq | XP_015651381.1 | SKP1-like protein 1A [Oryza sativa Japonica Group] | 0 |
| Q6H4D6 | SKP1-like protein 5 OS=Oryza sativa subsp. japonica OX=39947 GN=SKP5 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6G1DDN7 | SKP1-like protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_000147 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
No orthogroup found for Oco18G001440.