halophFGD

Basic Information

Locus ID: Oco18G000740

Species & Taxonomic ID: Oryza coarctata & 77588

Genome Assembly: GCA_030770085.1

Description: Anaphase-promoting complex subunit 4 WD40 domain

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
LG18	2231659	2233851	+	Oco18G000740

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.75	33,080.75 Da	51.12	78.44	-0.30

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
SUPERFAMILY	SSF50978	WD40 repeat-like	138	297	4.03E-16	IPR036322
Gene3D	G3DSA:2.130.10.10	-	114	301	3.7E-20	IPR015943

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K03363 (cell division cycle 20, cofactor of APC complex)

Pathway:

ko04110 (Cell cycle) map04110 (Cell cycle) ko04111 (Cell cycle - yeast) map04111 (Cell cycle - yeast) ko04113 (Meiosis - yeast) map04113 (Meiosis - yeast) ko04114 (Oocyte meiosis) map04114 (Oocyte meiosis) ko04120 (Ubiquitin mediated proteolysis) map04120 (Ubiquitin mediated proteolysis)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G33260.2	Transducin family protein / WD-40 repeat family protein. putative cdc20 protein (CDC20.2)
RefSeq	XP_015611482.1	cell division cycle 20.2, cofactor of APC complex [Oryza sativa Japonica Group]
Swiss-Prot	Q9S7I8	Cell division cycle 20.2, cofactor of APC complex OS=Arabidopsis thaliana OX=3702 GN=CDC20-2 PE=1 SV=1
TrEMBL	A0A0E0LYP0	ANAPC4_WD40 domain-containing protein OS=Oryza punctata OX=4537 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

No orthogroup found for Oco18G000740.