Basic Information
Locus ID:
Oco18G000710
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG18 | 2145663 | 2157312 | + | Oco18G000710 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.97 | 86,562.56 Da | 57.20 | 61.00 | -0.84 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 395 | 422 | 2.3E-4 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 361 | 389 | 3.1E-9 | IPR001876 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 354 | 390 | 4.32E-7 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 353 | 391 | 8.2E-16 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 392 | 423 | 1.6E-8 | - |
| SMART | SM00547 | zf_4 | 363 | 387 | 1.6E-4 | IPR001876 |
| SMART | SM00547 | zf_4 | 396 | 420 | 1.0E-4 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 394 | 423 | 9.416206 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 361 | 390 | 10.082446 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 365 | 384 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 398 | 417 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 743 | 759 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 575 | 594 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 713 | 737 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 85 | 114 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 567 | 594 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 27 | 46 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 331 | 357 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 331 | 347 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 27 | 47 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 100 | 114 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 696 | 769 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G55040.1 | zinc finger (Ran-binding) family protein. | 0 |
| RefSeq | XP_015647751.2 | uncharacterized protein LOC4342984 [Oryza sativa Japonica Group] | 0 |
| Q8S9K3 | Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=VAR3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0E0LJJ5 | Zinc finger protein VAR3, chloroplastic OS=Oryza punctata OX=4537 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology