Basic Information
Locus ID:
Oco17G012320
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG17 | 17042236 | 17046002 | + | Oco17G012320 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.21 | 76,579.81 Da | 69.02 | 62.52 | -1.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16647 | mRING-HC-C3HC5_NEU1 | 615 | 655 | 1.70143E-21 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 613 | 660 | 4.5E-12 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 615 | 661 | 6.28E-9 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 594 | 667 | 2.1E-14 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 616 | 655 | 10.910707 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 391 | 405 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 185 | 217 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 185 | 210 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 59 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 142 | 162 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 322 | 351 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 384 | 405 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 331 | 351 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 477 | 497 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G04460.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_025875929.1 | uncharacterized protein LOC4347915 [Oryza sativa Japonica Group] | 0 |
| TrEMBL | A0A6G1DGG0 | RING-type domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_011144 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology