Basic Information
Locus ID:
Oco17G010950
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
BRIGHT, ARID (A/T-rich interaction domain) domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG17 | 15913276 | 15914749 | - | Oco17G010950 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.99 | 36,241.29 Da | 51.96 | 62.43 | -0.61 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16872 | ARID_HMGB9-like | 19 | 104 | 9.91738E-47 | - |
| CDD | cd01390 | HMGB-UBF_HMG-box | 243 | 306 | 1.92088E-17 | - |
| Pfam | PF00505 | HMG (high mobility group) box | 243 | 309 | 5.7E-11 | IPR009071 |
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 20 | 104 | 1.9E-20 | IPR001606 |
| SUPERFAMILY | SSF46774 | ARID-like | 10 | 116 | 1.15E-32 | IPR036431 |
| SUPERFAMILY | SSF47095 | HMG-box | 240 | 311 | 2.62E-17 | IPR036910 |
| Gene3D | G3DSA:1.10.150.60 | - | 9 | 114 | 5.6E-29 | IPR036431 |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 227 | 315 | 2.5E-15 | IPR036910 |
| SMART | SM01014 | ARID_2 | 14 | 104 | 5.5E-32 | - |
| SMART | SM00501 | bright_3 | 18 | 109 | 7.2E-33 | IPR001606 |
| SMART | SM00398 | hmgende2 | 242 | 310 | 2.8E-10 | IPR009071 |
| ProSiteProfiles | PS51011 | ARID domain profile. | 17 | 108 | 27.784967 | IPR001606 |
| ProSiteProfiles | PS50118 | HMG boxes A and B DNA-binding domains profile. | 243 | 309 | 13.617615 | IPR009071 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 203 | 249 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 125 | 150 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 203 | 217 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G76110.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_015696443.2 | high mobility group B protein 9-like [Oryza brachyantha] | 0 |
| Q9SGS2 | High mobility group B protein 9 OS=Arabidopsis thaliana OX=3702 GN=HMGB9 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6G1DE76 | ARID domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_004691 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology