HalophFGD

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Basic Information
Locus ID: Oco17G009530
Species & Taxonomic ID: Oryza coarctata & 77588
Genome Assembly: GCA_030770085.1
Description: F-box associated domain
Maps and Mapping Data
Chromosome Start End Strand ID
LG17 14550071 14555179 + Oco17G009530
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
6.46 34,650.88 Da 40.68 74.01 -0.44
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
TIGRFAM TIGR01640 F_box_assoc_1: F-box protein interaction domain 36 167 4.4E-16 IPR017451
Best hit
Source Best Hit ID Description E-value
RefSeq XP_052167228.1 F-box protein CPR1-like [Oryza glaberrima] 0
TrEMBL A0A0E0IMF5 F-box domain-containing protein OS=Oryza nivara OX=4536 PE=4 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network
🔍 Protein-Protein Interaction Network
Orthology
Family Species Count Orthologous Genes
Poaceae Echinochloa crus-galli 7 AH03.2319, AH06.87, BH03.2454, CH03.2648, CH03.2649, CH06.82 ...
CH03.2651
Poaceae Eleusine coracana subsp. coracana 7 gene-QOZ80_6AG0533780, gene-QOZ80_6AG0538870 ...
gene-QOZ80_6AG0538880, gene-QOZ80_6AG0538890, gene-QOZ80_6BG0492150, gene-QOZ80_6BG0492160, gene-QOZ80_6BG0492210
Poaceae Hordeum vulgare 4 HORVU.MOREX.r3.2HG0195230.1.CDS1 ...
HORVU.MOREX.r3.5HG0477220.1.CDS1, HORVU.MOREX.r3.5HG0489060.1.CDS1, HORVU.MOREX.r3.5HG0489110.1
Poaceae Lolium multiflorum 13 gene-QYE76_003498, gene-QYE76_004274, gene-QYE76_004797 ...
gene-QYE76_005988, gene-QYE76_005991, gene-QYE76_005995, gene-QYE76_005996, gene-QYE76_006035, gene-QYE76_006036, gene-QYE76_006039, gene-QYE76_006364, gene-QYE76_006492, gene-QYE76_030931
Poaceae Oryza coarctata 4 Oco17G003620, Oco17G007470, Oco17G009530, Oco18G003640
Poaceae Oryza sativa 4 LOC_Os09g20650.1, LOC_Os09g30170.1, LOC_Os09g30180.1 ...
LOC_Os09g34200.1
Poaceae Paspalum vaginatum 2 gene-BS78_02G167800, gene-BS78_02G217500
Poaceae Puccinellia tenuiflora 9 Pt_Chr0701658, Pt_Chr0701661, Pt_Chr0701662, Pt_Chr0701663 ...
Pt_Chr0701693, Pt_Chr0701696, Pt_Chr0701697, Pt_Chr0701699, Pt_Chr0702428
Poaceae Sporobolus alterniflorus 13 Chr0G015190, Chr0G015200, Chr10G007830, Chr10G007840 ...
Chr10G007850, Chr10G011140, Chr11G011130, Chr11G011290, Chr14G015880, Chr14G015890, Chr21G012180, Chr21G014920, Chr21G014930
Poaceae Thinopyrum elongatum 7 Tel5E01G330000, Tel5E01G406100, Tel5E01G406200 ...
Tel5E01G406300, Tel5E01G406400, Tel5E01G406600, Tel5E01G414700
Poaceae Triticum dicoccoides 18 gene_TRIDC5AG031850, gene_TRIDC5AG039550 ...
gene_TRIDC5AG039570, gene_TRIDC5AG039600, gene_TRIDC5AG039610, gene_TRIDC5AG039620, gene_TRIDC5AG039650, gene_TRIDC5AG039660, gene_TRIDC5AG039670, gene_TRIDC5BG033480, gene_TRIDC5BG042010, gene_TRIDC5BG042020, gene_TRIDC5BG042040, gene_TRIDC5BG042050, gene_TRIDC5BG042070, gene_TRIDC5BG042080, gene_TRIDC5BG042120, gene_TRIDC5BG042130
Poaceae Triticum aestivum 33 TraesCS2B02G484400.1, TraesCS2D02G463300.1 ...
TraesCS5A02G188400.1.cds1, TraesCS5A02G253800.1.cds1, TraesCS5A02G253900.2, TraesCS5A02G254000.1, TraesCS5A02G254100.1, TraesCS5A02G254200.2, TraesCS5A02G254300.1, TraesCS5A02G254400.1, TraesCS5A02G254500.1, TraesCS5B02G195200.1.cds1, TraesCS5B02G252700.1.cds1, TraesCS5B02G252800.2, TraesCS5B02G252900.3, TraesCS5B02G253000.1, TraesCS5B02G253100.1, TraesCS5B02G253200.3, TraesCS5B02G253300.3, TraesCS5B02G253400.1, TraesCS5B02G253500.2, TraesCS5B02G253600.1, TraesCS5D02G202600.1.cds1, TraesCS5D02G261400.1.cds1, TraesCS5D02G261500.1, TraesCS5D02G261600.4, TraesCS5D02G261700.1, TraesCS5D02G261800.1, TraesCS5D02G261900.3, TraesCS5D02G262000.1.cds1, TraesCS5D02G262100.2, TraesCS5D02G262200.1, TraesCS5D02G262300.1
Poaceae Zea mays 2 Zm00001eb101520_P001, Zm00001eb311420_P001
Poaceae Zoysia japonica 4 nbis-gene-19550, nbis-gene-19552, nbis-gene-19553 ...
nbis-gene-30501
Poaceae Zoysia macrostachya 5 Zma_g30238, Zma_g30509, Zma_g32489, Zma_g32745, Zma_g32746
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.