HalophFGD

  • Home
  • Species
  • Search
  • Tools
    • Blast
    • GO enrichment
    • KEGG enrichment
    • Genome browser
    • Sequence extract
    • Network
    • Motif Enrichment
    • Motif Scan
    • Primer Design
  • Download
  • Manual
  • Contact
Basic Information
Locus ID: Oco17G007470
Species & Taxonomic ID: Oryza coarctata & 77588
Genome Assembly: GCA_030770085.1
Description: A Receptor for Ubiquitination Targets
Maps and Mapping Data
Chromosome Start End Strand ID
LG17 12652204 12655471 + Oco17G007470
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
7.86 53,081.42 Da 45.66 87.00 -0.17
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
Pfam PF00646 F-box domain 94 131 5.2E-10 IPR001810
SUPERFAMILY SSF81383 F-box domain 94 158 2.09E-14 IPR036047
Gene3D G3DSA:1.20.1280.50 - 92 130 2.0E-7 -
SMART SM00256 fbox_2 94 134 1.6E-10 IPR001810
Gene Ontology
Molecular Function:
GO:0005515 (protein binding)
Best hit
Source Best Hit ID Description E-value
TAIR AT5G47300.1 F-box and associated interaction domains-containing protein. 0
RefSeq XP_021308737.1 putative F-box protein At3g17480 [Sorghum bicolor] 0
Swiss-Prot Q9LVS9 Probable F-box protein At5g47300 OS=Arabidopsis thaliana OX=3702 GN=At5g47300 PE=4 SV=1 0
TrEMBL J3MYH5 F-box domain-containing protein OS=Oryza brachyantha OX=4533 PE=4 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network
🔍 Protein-Protein Interaction Network
Orthology
Family Species Count Orthologous Genes
Poaceae Echinochloa crus-galli 7 AH03.2319, AH06.87, BH03.2454, CH03.2648, CH03.2649, CH06.82 ...
CH03.2651
Poaceae Eleusine coracana subsp. coracana 7 gene-QOZ80_6AG0533780, gene-QOZ80_6AG0538870 ...
gene-QOZ80_6AG0538880, gene-QOZ80_6AG0538890, gene-QOZ80_6BG0492150, gene-QOZ80_6BG0492160, gene-QOZ80_6BG0492210
Poaceae Hordeum vulgare 4 HORVU.MOREX.r3.2HG0195230.1.CDS1 ...
HORVU.MOREX.r3.5HG0477220.1.CDS1, HORVU.MOREX.r3.5HG0489060.1.CDS1, HORVU.MOREX.r3.5HG0489110.1
Poaceae Lolium multiflorum 13 gene-QYE76_003498, gene-QYE76_004274, gene-QYE76_004797 ...
gene-QYE76_005988, gene-QYE76_005991, gene-QYE76_005995, gene-QYE76_005996, gene-QYE76_006035, gene-QYE76_006036, gene-QYE76_006039, gene-QYE76_006364, gene-QYE76_006492, gene-QYE76_030931
Poaceae Oryza coarctata 4 Oco17G003620, Oco17G007470, Oco17G009530, Oco18G003640
Poaceae Oryza sativa 4 LOC_Os09g20650.1, LOC_Os09g30170.1, LOC_Os09g30180.1 ...
LOC_Os09g34200.1
Poaceae Paspalum vaginatum 2 gene-BS78_02G167800, gene-BS78_02G217500
Poaceae Puccinellia tenuiflora 9 Pt_Chr0701658, Pt_Chr0701661, Pt_Chr0701662, Pt_Chr0701663 ...
Pt_Chr0701693, Pt_Chr0701696, Pt_Chr0701697, Pt_Chr0701699, Pt_Chr0702428
Poaceae Sporobolus alterniflorus 13 Chr0G015190, Chr0G015200, Chr10G007830, Chr10G007840 ...
Chr10G007850, Chr10G011140, Chr11G011130, Chr11G011290, Chr14G015880, Chr14G015890, Chr21G012180, Chr21G014920, Chr21G014930
Poaceae Thinopyrum elongatum 7 Tel5E01G330000, Tel5E01G406100, Tel5E01G406200 ...
Tel5E01G406300, Tel5E01G406400, Tel5E01G406600, Tel5E01G414700
Poaceae Triticum dicoccoides 18 gene_TRIDC5AG031850, gene_TRIDC5AG039550 ...
gene_TRIDC5AG039570, gene_TRIDC5AG039600, gene_TRIDC5AG039610, gene_TRIDC5AG039620, gene_TRIDC5AG039650, gene_TRIDC5AG039660, gene_TRIDC5AG039670, gene_TRIDC5BG033480, gene_TRIDC5BG042010, gene_TRIDC5BG042020, gene_TRIDC5BG042040, gene_TRIDC5BG042050, gene_TRIDC5BG042070, gene_TRIDC5BG042080, gene_TRIDC5BG042120, gene_TRIDC5BG042130
Poaceae Triticum aestivum 33 TraesCS2B02G484400.1, TraesCS2D02G463300.1 ...
TraesCS5A02G188400.1.cds1, TraesCS5A02G253800.1.cds1, TraesCS5A02G253900.2, TraesCS5A02G254000.1, TraesCS5A02G254100.1, TraesCS5A02G254200.2, TraesCS5A02G254300.1, TraesCS5A02G254400.1, TraesCS5A02G254500.1, TraesCS5B02G195200.1.cds1, TraesCS5B02G252700.1.cds1, TraesCS5B02G252800.2, TraesCS5B02G252900.3, TraesCS5B02G253000.1, TraesCS5B02G253100.1, TraesCS5B02G253200.3, TraesCS5B02G253300.3, TraesCS5B02G253400.1, TraesCS5B02G253500.2, TraesCS5B02G253600.1, TraesCS5D02G202600.1.cds1, TraesCS5D02G261400.1.cds1, TraesCS5D02G261500.1, TraesCS5D02G261600.4, TraesCS5D02G261700.1, TraesCS5D02G261800.1, TraesCS5D02G261900.3, TraesCS5D02G262000.1.cds1, TraesCS5D02G262100.2, TraesCS5D02G262200.1, TraesCS5D02G262300.1
Poaceae Zea mays 2 Zm00001eb101520_P001, Zm00001eb311420_P001
Poaceae Zoysia japonica 4 nbis-gene-19550, nbis-gene-19552, nbis-gene-19553 ...
nbis-gene-30501
Poaceae Zoysia macrostachya 5 Zma_g30238, Zma_g30509, Zma_g32489, Zma_g32745, Zma_g32746
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.