Basic Information
Locus ID:
Oco17G006920
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG17 | 11926822 | 11935700 | - | Oco17G006920 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.44 | 102,354.07 Da | 57.54 | 67.45 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02661 | Peptidase_C19E | 384 | 686 | 6.46587E-131 | - |
| Pfam | PF01753 | MYND finger | 117 | 154 | 1.4E-7 | IPR002893 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 383 | 685 | 5.3E-47 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 379 | 691 | 1.2E-86 | IPR038765 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 113 | 156 | 1.52E-10 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 376 | 699 | 5.3E-94 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 109 | 156 | 5.2E-10 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 383 | 688 | 52.777851 | IPR028889 |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 117 | 154 | 11.395257 | IPR002893 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 384 | 399 | - | IPR018200 |
| ProSitePatterns | PS01360 | Zinc finger MYND-type signature. | 117 | 154 | - | IPR002893 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 873 | 897 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G65450.1 | ubiquitin-specific protease 17. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_052168441.1 | ubiquitin carboxyl-terminal hydrolase 16-like [Oryza glaberrima] | 0 |
| Q9FKP5 | Ubiquitin carboxyl-terminal hydrolase 17 OS=Arabidopsis thaliana OX=3702 GN=UBP17 PE=2 SV=1 | 0 | |
| TrEMBL | B8BCM6 | Ubiquitin carboxyl-terminal hydrolase 17 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_31685 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology