Basic Information
Locus ID:
Oco17G006880
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
DNA binding domain with preference for A/T rich regions
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG17 | 11864013 | 11865740 | + | Oco17G006880 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.83 | 41,452.73 Da | 62.25 | 66.72 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06257 | DnaJ | 71 | 131 | 7.37665E-6 | IPR001623 |
| SUPERFAMILY | SSF46565 | Chaperone J-domain | 63 | 141 | 1.33E-7 | IPR036869 |
| Gene3D | G3DSA:1.10.287.110 | DnaJ domain | 55 | 160 | 5.2E-7 | IPR036869 |
| ProSiteProfiles | PS50076 | dnaJ domain profile. | 71 | 142 | 8.97716 | IPR001623 |
| PRINTS | PR01217 | Proline rich extensin signature | 156 | 177 | 7.3E-13 | - |
| PRINTS | PR01217 | Proline rich extensin signature | 218 | 243 | 7.3E-13 | - |
| PRINTS | PR01217 | Proline rich extensin signature | 179 | 195 | 7.3E-13 | - |
| PRINTS | PR01217 | Proline rich extensin signature | 200 | 217 | 7.3E-13 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 153 | 239 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 370 | 390 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 368 | 390 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 161 | 239 | - | - |
| Coils | Coil | Coil | 387 | 390 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_015651436.1 | protein transport protein SEC31 [Oryza sativa Japonica Group] | 0 |
| TrEMBL | A0A0E0QSG8 | J domain-containing protein OS=Oryza rufipogon OX=4529 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology