Basic Information
Locus ID:
Oco17G005970
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Belongs to the protein kinase superfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG17 | 10829194 | 10830649 | - | Oco17G005970 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.08 | 39,487.30 Da | 49.91 | 76.50 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 109 | 201 | 5.9E-10 | IPR001245 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 275 | 341 | 1.1E-5 | IPR001245 |
| Pfam | PF00069 | Protein kinase domain | 223 | 258 | 6.0E-8 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 97 | 343 | 6.88E-41 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 197 | 271 | 4.6E-10 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 274 | 351 | 7.8E-10 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 98 | 190 | 1.6E-18 | - |
| SMART | SM00220 | serkin_6 | 109 | 346 | 3.8E-12 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 109 | 346 | 20.018703 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 224 | 236 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 115 | 136 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 46 | 81 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 50 | 70 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G49470.1 | PAS domain-containing protein tyrosine kinase family protein. | 0 |
| RefSeq | XP_040383269.1 | LOW QUALITY PROTEIN: serine/threonine-protein kinase EDR1-like [Oryza brachyantha] | 0 |
| Q7T6Y2 | Putative serine/threonine-protein kinase/receptor R831 OS=Acanthamoeba polyphaga mimivirus OX=212035 GN=MIMI_R831 PE=3 SV=2 | 0 | |
| TrEMBL | A0A6G1DS84 | Protein kinase domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_034614 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg36628 |
| Apiaceae | Apium graveolens | 1 | Ag9G02583 |
| Arecaceae | Cocos nucifera | 1 | COCNU_03G003820 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103704884, gene-LOC120111673 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_06.457.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri14G28597 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0085s00026.v1.0, Dusal.0969s00006.v1.0 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-224 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.675 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00013409 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.2096, BH03.2317, CH03.2403 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0536660, gene-QOZ80_6BG0489970 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0479880.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_005471, gene-QYE76_005474 |
| Poaceae | Oryza coarctata | 2 | Oco17G005970, Oco18G006060 |
| Poaceae | Oryza sativa | 1 | LOC_Os09g27150.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G197500 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr10G008970 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G344700 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG033540, gene_TRIDC5BG035380 |
| Poaceae | Zea mays | 1 | Zm00001eb100280_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-19744 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g32624 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_10_RagTag.674 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-13819, nbisL1-mrna-25870 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-8905 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-8924 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000033l.477 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00014563 |
| Salicaceae | Populus euphratica | 1 | populus_peu12594 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107027716 |