Basic Information
Locus ID:
Oco17G005570
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
In Between Ring fingers
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG17 | 10436129 | 10444166 | - | Oco17G005570 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.81 | 81,950.83 Da | 47.82 | 69.83 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 576 | 622 | 1.8E-5 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 489 | 545 | 8.24E-15 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 640 | 686 | 4.24E-10 | - |
| Gene3D | G3DSA:1.20.120.1750 | - | 634 | 712 | 9.6E-11 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 487 | 576 | 9.9E-17 | IPR013083 |
| SMART | SM00647 | ibrneu5 | 565 | 632 | 6.0E-5 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 637 | 695 | 0.38 | IPR002867 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 489 | 709 | 23.156988 | IPR044066 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 493 | 538 | 9.361642 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 511 | 520 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 26 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 121 | 183 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_052168652.1 | uncharacterized protein LOC127785258 [Oryza glaberrima] | 0 |
| Q5RFV4 | Probable E3 ubiquitin-protein ligase RNF144A-A OS=Danio rerio OX=7955 GN=rnf144aa PE=3 SV=1 | 0 | |
| TrEMBL | A0A0E0M1L3 | RBR-type E3 ubiquitin transferase OS=Oryza punctata OX=4537 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 4 | AH03.2028, BH03.2377, CH03.2352, CH03.2353 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0481110.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_005352, gene-QYE76_005438, gene-QYE76_015362 |
| Poaceae | Oryza coarctata | 2 | Oco17G005570, Oco18G005680 |
| Poaceae | Oryza sativa | 1 | LOC_Os09g26470.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G192700 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr10G009320, Chr10G009330 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G354700 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG034770, gene_TRIDC5BG036480 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G215600.1, TraesCS5B02G214100.1 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-19790 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g32591 |