Basic Information
Locus ID:
Oco17G005560
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
IBR domain, a half RING-finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG17 | 10434630 | 10435924 | - | Oco17G005560 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.66 | 29,377.42 Da | 41.48 | 65.94 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 125 | 179 | 2.3E-8 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 128 | 180 | 6.89E-5 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 194 | 248 | 1.77E-5 | - |
| Gene3D | G3DSA:1.20.120.1750 | - | 188 | 263 | 8.9E-6 | - |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 57 | 258 | 12.237564 | IPR044066 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G14250.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_015651411.1 | probable E3 ubiquitin-protein ligase RNF217 isoform X2 [Oryza sativa Japonica Group] | 0 |
| TrEMBL | A0A0E0M1L2 | RBR-type E3 ubiquitin transferase OS=Oryza punctata OX=4537 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | AH03.2027, BH03.2378 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0481120.1.CDS1 |
| Poaceae | Oryza coarctata | 2 | Oco17G005560, Oco18G005670 |
| Poaceae | Oryza sativa | 2 | LOC_Os09g26460.1, LOC_Os11g38710.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G192600 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G354800 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC5AG034790 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G215700.1, TraesCS5B02G214200.1 ... |