Basic Information
Locus ID:
Oco17G004900
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
CAF1 family ribonuclease
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG17 | 9390291 | 9393783 | + | Oco17G004900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.87 | 30,838.68 Da | 19.14 | 88.50 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04857 | CAF1 family ribonuclease | 162 | 243 | 2.5E-6 | IPR006941 |
| Pfam | PF04857 | CAF1 family ribonuclease | 17 | 138 | 3.5E-6 | IPR006941 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 14 | 268 | 3.11E-88 | IPR012337 |
| Gene3D | G3DSA:3.30.420.10 | - | 2 | 272 | 1.9E-95 | IPR036397 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32070.1 | Polynucleotidyl transferase, ribonuclease H-like superfamily protein. | 0 |
| RefSeq | XP_006660627.1 | probable CCR4-associated factor 1 homolog 7 [Oryza brachyantha] | 0 |
| Q9SKZ2 | Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana OX=3702 GN=CAF1-7 PE=2 SV=2 | 0 | |
| TrEMBL | A0A6G1DGD0 | poly(A)-specific ribonuclease OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_008324 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology