Basic Information
Locus ID:
Oco17G003830
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG17 | 7851844 | 7853748 | + | Oco17G003830 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.67 | 40,482.92 Da | 36.34 | 80.96 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 155 | 197 | 2.42538E-17 | - |
| Pfam | PF13639 | Ring finger domain | 155 | 198 | 1.4E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 149 | 202 | 6.56E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 104 | 204 | 4.3E-20 | IPR013083 |
| SMART | SM01197 | FANCL_C_2 | 152 | 206 | 0.0032 | - |
| SMART | SM00184 | ring_2 | 156 | 197 | 1.0E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 156 | 198 | 12.489278 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 357 | 387 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 216 | 236 | - | - |
| Coils | Coil | Coil | 84 | 104 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G40250.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_040383552.1 | RING-H2 finger protein ATL46-like [Oryza brachyantha] | 0 |
| Q9FL07 | RING-H2 finger protein ATL46 OS=Arabidopsis thaliana OX=3702 GN=ATL46 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0E0M0M3 | RING-type domain-containing protein OS=Oryza punctata OX=4537 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology