Basic Information
Locus ID:
Oco17G003620
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
F-box associated domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG17 | 7612283 | 7613847 | - | Oco17G003620 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.24 | 41,706.60 Da | 47.64 | 81.16 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08268 | F-box associated domain | 203 | 296 | 1.6E-6 | IPR013187 |
| Pfam | PF00646 | F-box domain | 16 | 43 | 7.4E-7 | IPR001810 |
| SUPERFAMILY | SSF50965 | Galactose oxidase, central domain | 105 | 338 | 4.97E-6 | IPR011043 |
| SUPERFAMILY | SSF81383 | F-box domain | 18 | 65 | 4.32E-11 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 14 | 64 | 4.3E-7 | - |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 105 | 298 | 5.0E-24 | IPR017451 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G47730.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_015611874.1 | putative F-box protein At2g02030 isoform X1 [Oryza sativa Japonica Group] | 0 |
| Q9SXA0 | Putative F-box protein At1g47730 OS=Arabidopsis thaliana OX=3702 GN=At1g47730 PE=4 SV=1 | 0 | |
| TrEMBL | Q6H4I3 | Os09g0372900 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os09g0372900 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology