halophFGD

Basic Information

Locus ID: Oco17G002980

Species & Taxonomic ID: Oryza coarctata & 77588

Genome Assembly: GCA_030770085.1

Description: Salt stress response/antifungal

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
LG17	6811278	6812899	+	Oco17G002980

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.54	14,568.47 Da	55.25	78.07	-0.26

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00069	Protein kinase domain	16	46	3.6E-8	IPR000719
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	17	122	3.78E-13	IPR011009
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	10	48	3.4E-10	-
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	49	128	3.3E-6	-
ProSiteProfiles	PS50011	Protein kinase domain profile.	1	135	11.24149	IPR000719
ProSitePatterns	PS00108	Serine/Threonine protein kinases active-site signature.	19	31	-	IPR008271

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

KEGG Pathway

KO Term:

K04733 (interleukin-1 receptor-associated kinase 4 [EC:2.7.11.1])

Pathway:

ko04010 (MAPK signaling pathway) map04010 (MAPK signaling pathway) map04064 (NF-kappa B signaling pathway) map04620 (Toll-like receptor signaling pathway) map04621 (NOD-like receptor signaling pathway) ko04624 (Toll and Imd signaling pathway) map04624 (Toll and Imd signaling pathway)

Best hit

Source	Best Hit ID	Description
TAIR	AT2G45590.1	Protein kinase superfamily protein.
RefSeq	XP_039803812.1	LOW QUALITY PROTEIN: probable kinase CHARK [Panicum virgatum]
Swiss-Prot	Q2QRN7	Probable kinase CHARK OS=Oryza sativa subsp. japonica OX=39947 GN=CHARK PE=2 SV=1
TrEMBL	A0A6G1DRN3	Protein kinase domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_031363 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

Family	Species	Count	Orthologous Genes
Poaceae	Oryza coarctata	1	Oco17G002980
Poaceae	Oryza sativa	1	LOC_Os09g17010.1