Basic Information
Locus ID:
Oco17G002670
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG17 | 6412211 | 6414289 | - | Oco17G002670 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.94 | 20,384.93 Da | 43.54 | 109.29 | 0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 102 | 143 | 2.6E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 92 | 147 | 8.03E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 88 | 149 | 5.5E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 102 | 142 | 2.7E-6 | IPR001841 |
| SMART | SM00744 | ringv_2 | 101 | 143 | 0.0043 | IPR011016 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 102 | 143 | 11.81064 | IPR001841 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80400.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_015611993.1 | E3 ubiquitin-protein ligase At1g63170 isoform X2 [Oryza sativa Japonica Group] | 0 |
| Q8LDB8 | E3 ubiquitin-protein ligase At1g63170 OS=Arabidopsis thaliana OX=3702 GN=At1g63170 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0E0LZT0 | RING-type domain-containing protein OS=Oryza punctata OX=4537 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Oryza coarctata | 1 | Oco17G002670 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-28094 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-7313 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-21245 |