halophFGD

Basic Information

Locus ID: Oco17G002620

Species & Taxonomic ID: Oryza coarctata & 77588

Genome Assembly: GCA_030770085.1

Short Name: RCE1

Description: Belongs to the ubiquitin-conjugating enzyme family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
LG17	6364510	6369209	-	Oco17G002620

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.45	17,038.49 Da	42.11	95.59	-0.31

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00179	Ubiquitin-conjugating enzyme	71	139	1.3E-20	IPR000608
SUPERFAMILY	SSF54495	UBC-like	71	141	1.45E-23	IPR016135
Gene3D	G3DSA:3.10.110.10	Ubiquitin Conjugating Enzyme	53	148	1.5E-22	IPR016135
SMART	SM00212	ubc_7	21	146	1.6E-4	-
ProSiteProfiles	PS50127	Ubiquitin-conjugating (UBC) core domain profile.	1	146	20.152313	IPR000608
ProSitePatterns	PS00183	Ubiquitin-conjugating (UBC) active site signature.	73	88	-	IPR023313

KEGG Pathway

KO Term:

K10579 (ubiquitin-conjugating enzyme E2 M [EC:2.3.2.34])

Pathway:

ko04120 (Ubiquitin mediated proteolysis) map04120 (Ubiquitin mediated proteolysis)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G36800.1	RUB1 conjugating enzyme 1. RUB1 conjugating enzyme that conjugates CUL1 and is involved in auxin response and embryogenesis. RCE1 protein physically interacts with RBX1, which may be the E3 for CUL1.
RefSeq	XP_015610865.1	NEDD8-conjugating enzyme Ubc12 [Oryza sativa Japonica Group]
Swiss-Prot	Q9SDY5	NEDD8-conjugating enzyme Ubc12 OS=Arabidopsis thaliana OX=3702 GN=RCE1 PE=1 SV=1
TrEMBL	A0A6G1DLW3	UBC core domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_022369 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

No orthogroup found for Oco17G002620.