Basic Information
Locus ID:
Oco17G002020
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG17 | 5326872 | 5327439 | + | Oco17G002020 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.83 | 20,656.75 Da | 30.52 | 92.78 | 0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00083 | Sugar (and other) transporter | 2 | 88 | 8.1E-20 | IPR005828 |
| Pfam | PF00083 | Sugar (and other) transporter | 95 | 160 | 2.9E-9 | IPR005828 |
| SUPERFAMILY | SSF103473 | MFS general substrate transporter | 2 | 141 | 9.55E-9 | IPR036259 |
| Gene3D | G3DSA:1.20.1250.20 | MFS general substrate transporter like domains | 1 | 95 | 3.9E-20 | IPR036259 |
| Gene3D | G3DSA:1.20.1250.20 | MFS general substrate transporter like domains | 96 | 165 | 9.2E-13 | IPR036259 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G11260.1 | sugar transporter 1. Encodes a H+/hexose cotransporter. | 0 |
| RefSeq | XP_052168440.1 | sugar transport protein MST6-like [Oryza glaberrima] | 0 |
| Q6Z401 | Sugar transport protein MST6 OS=Oryza sativa subsp. japonica OX=39947 GN=MST6 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6G1DI97 | MFS domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_013036 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg8121 |
| Apiaceae | Apium graveolens | 1 | Ag2G00720 |
| Poaceae | Echinochloa crus-galli | 1 | BH01.3244 |
| Poaceae | Oryza coarctata | 2 | Oco13G003610, Oco17G002020 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr10G012790 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC6BG023930 |
| Zosteraceae | Zostera marina | 2 | Zosma04g05630.v3.1, Zosma04g05650.v3.1 |