Basic Information
Locus ID:
Oco17G001060
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Fasciclin domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG17 | 2412209 | 2415567 | - | Oco17G001060 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.15 | 42,256.83 Da | 41.25 | 92.01 | 0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02469 | Fasciclin domain | 199 | 330 | 4.3E-14 | IPR000782 |
| Pfam | PF02469 | Fasciclin domain | 37 | 130 | 1.4E-4 | IPR000782 |
| SUPERFAMILY | SSF82153 | FAS1 domain | 193 | 330 | 9.42E-19 | IPR036378 |
| SUPERFAMILY | SSF82153 | FAS1 domain | 32 | 142 | 9.55E-17 | IPR036378 |
| Gene3D | G3DSA:2.30.180.10 | FAS1 domain | 25 | 165 | 2.4E-9 | IPR036378 |
| Gene3D | G3DSA:2.30.180.10 | FAS1 domain | 196 | 330 | 1.3E-9 | IPR036378 |
| SMART | SM00554 | fasc_3 | 225 | 331 | 5.2E-13 | IPR000782 |
| ProSiteProfiles | PS50213 | FAS1/BIgH3 domain profile. | 186 | 328 | 11.093836 | IPR000782 |
| ProSiteProfiles | PS50213 | FAS1/BIgH3 domain profile. | 26 | 173 | 11.093836 | IPR000782 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 340 | 374 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 344 | 371 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G12730.1 | FASCICLIN-like arabinogalactan 2. AF333971 Arabidopsis thaliana fasciclin-like arabinogalactan-protein 2 (Fla2) mRNA, complete cds | 0 |
| RefSeq | XP_006660446.1 | fasciclin-like arabinogalactan protein 2 [Oryza brachyantha] | 0 |
| Q9SU13 | Fasciclin-like arabinogalactan protein 2 OS=Arabidopsis thaliana OX=3702 GN=FLA2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0E0LYS8 | FAS1 domain-containing protein OS=Oryza punctata OX=4537 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology