Basic Information
Locus ID:
Oco17G000570
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG17 | 1127828 | 1137479 | + | Oco17G000570 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.54 | 143,867.06 Da | 37.56 | 87.99 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 81 | 389 | 1.57245E-76 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 313 | 348 | 4.2E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 198 | 235 | 1.7E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 156 | 193 | 1.9E-8 | IPR001680 |
| Pfam | PF04053 | Coatomer WD associated region | 420 | 840 | 1.3E-128 | IPR006692 |
| Pfam | PF06957 | Coatomer (COPI) alpha subunit C-terminus | 888 | 1288 | 2.5E-166 | IPR010714 |
| Pfam | PF00400 | WD domain, G-beta repeat | 270 | 303 | 8.4E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 116 | 151 | 3.3E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 73 | 387 | 7.69E-74 | IPR036322 |
| SUPERFAMILY | SSF82171 | DPP6 N-terminal domain-like | 394 | 630 | 2.94E-7 | - |
| Gene3D | G3DSA:1.25.40.470 | - | 712 | 884 | 3.2E-60 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 71 | 391 | 5.3E-126 | IPR015943 |
| SMART | SM00320 | WD40_4 | 309 | 348 | 2.6E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 112 | 151 | 9.2E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 196 | 235 | 4.5E-11 | IPR001680 |
| SMART | SM00320 | WD40_4 | 351 | 389 | 52.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 154 | 193 | 8.2E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 265 | 304 | 5.5E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 70 | 109 | 1.2 | IPR001680 |
| PIRSF | PIRSF003354 | Alpha-COP | 71 | 1286 | 0.0 | IPR016391 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 316 | 357 | 15.320672 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 203 | 236 | 15.320672 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 272 | 306 | 10.574686 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 316 | 348 | 11.81377 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 119 | 154 | 10.021053 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 161 | 193 | 10.891048 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 161 | 202 | 13.716598 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 203 | 236 | 12.631039 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 272 | 313 | 12.981398 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 119 | 160 | 12.881143 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 222 | 236 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 222 | 236 | 6.2E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 335 | 349 | 6.2E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 180 | 194 | 6.2E-7 | IPR020472 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G62020.1 | Coatomer, alpha subunit. | 0 |
| RefSeq | XP_052167532.1 | coatomer subunit alpha-3 [Oryza glaberrima] | 0 |
| Q0J3D9 | Coatomer subunit alpha-3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os09g0127800 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0E0HBV8 | Coatomer subunit alpha OS=Oryza nivara OX=4536 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology