Basic Information
Locus ID:
Oco16G013790
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG16 | 19311272 | 19317198 | + | Oco16G013790 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.39 | 73,089.22 Da | 44.09 | 76.89 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01927 | cyclophilin_WD40 | 501 | 648 | 3.46271E-113 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 91 | 119 | 0.021 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 129 | 163 | 0.013 | IPR001680 |
| Pfam | PF00160 | Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD | 501 | 650 | 8.5E-57 | IPR002130 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 90 | 316 | 6.5E-29 | IPR036322 |
| SUPERFAMILY | SSF50891 | Cyclophilin-like | 497 | 650 | 2.78E-69 | IPR029000 |
| Gene3D | G3DSA:2.130.10.10 | - | 179 | 468 | 1.8E-8 | IPR015943 |
| Gene3D | G3DSA:2.40.100.10 | - | 487 | 653 | 3.6E-77 | IPR029000 |
| Gene3D | G3DSA:2.130.10.10 | - | 56 | 174 | 6.7E-12 | IPR015943 |
| SMART | SM00320 | WD40_4 | 124 | 163 | 0.023 | IPR001680 |
| SMART | SM00320 | WD40_4 | 82 | 119 | 6.1E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 270 | 309 | 11.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 214 | 253 | 11.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 88 | 119 | 9.505904 | IPR001680 |
| ProSiteProfiles | PS50072 | Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. | 496 | 650 | 37.674717 | IPR002130 |
| ProSitePatterns | PS00170 | Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. | 534 | 551 | - | IPR020892 |
| PRINTS | PR00153 | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 610 | 625 | 5.9E-31 | IPR002130 |
| PRINTS | PR00153 | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 513 | 528 | 5.9E-31 | IPR002130 |
| PRINTS | PR00153 | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 597 | 609 | 5.9E-31 | IPR002130 |
| PRINTS | PR00153 | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 582 | 597 | 5.9E-31 | IPR002130 |
| PRINTS | PR00153 | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 539 | 551 | 5.9E-31 | IPR002130 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 33 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 50 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G44600.1 | cyclophilin71. Cyclophilin71 is a WD40 domain cyclophilin, which functions in gene repression, organogenesis and meristem development. CYP71 physically interacts with histone H3. | 0 |
| RefSeq | XP_015696024.1 | peptidyl-prolyl cis-trans isomerase CYP71 [Oryza brachyantha] | 0 |
| Q8W4D0 | Peptidyl-prolyl cis-trans isomerase CYP71 OS=Arabidopsis thaliana OX=3702 GN=CYP71 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0D9XAT7 | PPIase cyclophilin-type domain-containing protein OS=Leersia perrieri OX=77586 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg16458 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_6786 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah028918 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g176490 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg26988, Sbi_jg33564 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg8269 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00002941 |
| Amaranthaceae | Suaeda glauca | 1 | Sgl73277 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000004761, gene:ENSEOMG00000035535 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0000580, CQ.Regalona.r1.9BG0005220 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30056970 |
| Apiaceae | Apium graveolens | 1 | Ag11G04360 |
| Arecaceae | Cocos nucifera | 1 | COCNU_02G016330 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103715399 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.628.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri2G19380 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G44600.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10002440m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g16610.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g057590.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G1769 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G1759 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno04g00110 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.1280s00002.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g02490 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG09.719 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00015838 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G00709, Lb3G19857 |
| Poaceae | Echinochloa crus-galli | 3 | AH08.2365, BH08.2539, CH08.2710 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_8AG0640560, gene-QOZ80_8BG0669170 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0688880.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_030729 |
| Poaceae | Oryza coarctata | 2 | Oco15G014520, Oco16G013790 |
| Poaceae | Oryza sativa | 1 | LOC_Os08g44330.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_07G225600 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0403386 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr20G003220, Chr29G000430 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G480200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG036430, gene_TRIDC7BG027710 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G277700.1, TraesCS7B02G175400.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb176200_P001 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g24522 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.1612, evm.TU.LG12.282 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g00170 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_12_RagTag.570 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-24168 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-14407 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-19858 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000027l.220 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00018246 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-5763 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-12045 |
| Salicaceae | Populus euphratica | 1 | populus_peu36751 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132600564 |
| Solanaceae | Solanum chilense | 1 | SOLCI003372500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107005059 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_9531 |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G1831 |
| Zosteraceae | Zostera marina | 1 | Zosma01g20030.v3.1 |