Basic Information
Locus ID:
Oco16G013600
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG16 | 19179266 | 19183157 | + | Oco16G013600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.66 | 39,609.85 Da | 40.02 | 81.68 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 245 | 281 | 0.031 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 32 | 345 | 2.56E-31 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 16 | 348 | 1.4E-48 | IPR015943 |
| SMART | SM00320 | WD40_4 | 110 | 150 | 0.015 | IPR001680 |
| SMART | SM00320 | WD40_4 | 154 | 197 | 220.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 303 | 343 | 0.69 | IPR001680 |
| SMART | SM00320 | WD40_4 | 56 | 98 | 350.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 200 | 238 | 22.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 242 | 282 | 7.1E-5 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 249 | 281 | 9.177421 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 249 | 281 | 10.942887 | IPR001680 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G20540.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_015648427.1 | WD repeat-containing protein DWA2 [Oryza sativa Japonica Group] | 0 |
| Q6NPN9 | WD repeat-containing protein DWA2 OS=Arabidopsis thaliana OX=3702 GN=DWA2 PE=1 SV=1 | 0 | |
| TrEMBL | Q69VM6 | Os08g0554000 protein OS=Oryza sativa subsp. japonica OX=39947 GN=OJ1125_C01.14-1 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg11654, jg26310 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_8365 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah035956 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg39887, Sbi_jg55227 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg14433 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00014201 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl12037, Sgl12239, Sgl17330, Sgl17468 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000018687, gene:ENSEOMG00000035235 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0022720, CQ.Regalona.r1.1BG0001510 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30048540 |
| Apiaceae | Apium graveolens | 1 | Ag3G02607 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103701080, gene-LOC120107714 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.1077.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G08261 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G20540.1, AT1G76260.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10008062m.g.v1.0, Thhalv10018792m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g18250.v2.2, Sp5g31400.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB03g055110.2N, BniB04g035170.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G0765 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G0860 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno10g03620 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0072s00011.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g17720 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-1756 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.109 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00020545 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G21263 |
| Poaceae | Echinochloa crus-galli | 3 | AH08.2341, BH08.2484, CH08.2678 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_8AG0640020, gene-QOZ80_8BG0668640 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0688280.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_030644 |
| Poaceae | Oryza coarctata | 2 | Oco15G014330, Oco16G013600 |
| Poaceae | Oryza sativa | 1 | LOC_Os08g44010.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_07G223100 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0403409 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr20G003020, Chr29G000620 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G478300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG036170, gene_TRIDC7BG027430 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G276100.1, TraesCS7B02G173900.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb039840_P001, Zm00001eb180420_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-17632, nbis-gene-42844 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g23417, Zma_g24509 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.527, evm.TU.LG12.1195 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g07370 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_7_RagTag.394, evm.TU.Scaffold_8_RagTag.1341 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-9132 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-19073 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000018l.463 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-9572 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-18722 |
| Salicaceae | Populus euphratica | 2 | populus_peu15459, populus_peu33102 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132628191 |
| Solanaceae | Solanum chilense | 1 | SOLCI006960700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107015654 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_1158 |
| Tamaricaceae | Tamarix chinensis | 2 | TC04G2461, TC04G2462 |
| Zosteraceae | Zostera marina | 1 | Zosma01g24750.v3.1 |