Basic Information
Locus ID:
Oco16G012880
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Short Name:
CPK24
Description:
EF-hand domain pair
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG16 | 18542643 | 18545107 | - | Oco16G012880 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.19 | 60,148.71 Da | 48.19 | 82.19 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05117 | STKc_CAMK | 58 | 338 | 1.00063E-126 | - |
| CDD | cd00051 | EFh | 458 | 515 | 1.1075E-15 | IPR002048 |
| CDD | cd00051 | EFh | 386 | 444 | 2.99888E-14 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 389 | 445 | 1.3E-9 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 457 | 514 | 7.8E-11 | IPR002048 |
| Pfam | PF00069 | Protein kinase domain | 59 | 339 | 6.2E-62 | IPR000719 |
| SUPERFAMILY | SSF47473 | EF-hand | 363 | 525 | 2.66E-39 | IPR011992 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 54 | 351 | 5.53E-77 | IPR011009 |
| Gene3D | G3DSA:1.10.238.10 | - | 348 | 517 | 9.8E-47 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 167 | 347 | 5.6E-60 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 60 | 166 | 1.2E-19 | - |
| SMART | SM00054 | efh_1 | 386 | 414 | 0.25 | IPR002048 |
| SMART | SM00054 | efh_1 | 489 | 517 | 5.8E-5 | IPR002048 |
| SMART | SM00220 | serkin_6 | 59 | 339 | 9.8E-88 | IPR000719 |
| SMART | SM00054 | efh_1 | 458 | 486 | 1.5 | IPR002048 |
| SMART | SM00054 | efh_1 | 422 | 450 | 0.28 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 485 | 520 | 13.509171 | IPR002048 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 59 | 339 | 45.007614 | IPR000719 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 382 | 417 | 14.150764 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 454 | 481 | 9.743292 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 418 | 453 | 9.324862 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 498 | 510 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 395 | 407 | - | IPR018247 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 201 | 213 | - | IPR008271 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 431 | 443 | - | IPR018247 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 65 | 88 | - | IPR017441 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G57530.1 | calcium-dependent protein kinase 32. Calcium-dependent Protein Kinase. ABA signaling component that regulates the ABA-responsive gene expression via ABF4. AtCPK32 has autophosphorylation activity and can phosphorylate ABF4 in vitro | 0 |
| RefSeq | XP_052164725.1 | calcium-dependent protein kinase 21 [Oryza glaberrima] | 0 |
| Q6ZIU9 | Calcium-dependent protein kinase 21 OS=Oryza sativa subsp. japonica OX=39947 GN=CPK21 PE=2 SV=1 | 0 | |
| TrEMBL | I1QLD7 | Calcium-dependent protein kinase 30 OS=Oryza glaberrima OX=4538 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH08.2242, BH08.2372, CH08.2548 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_8AG0638190, gene-QOZ80_8BG0667730 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0686030.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_030419, gene-QYE76_061945 |
| Poaceae | Oryza coarctata | 2 | Oco15G013700, Oco16G012880 |
| Poaceae | Oryza sativa | 1 | LOC_Os08g42750.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_07G210600 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0403526 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr20G002420, Chr29G001060 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G466300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG034960, gene_TRIDC7BG026070 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G267000.1, TraesCS7B02G165200.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb198360_P004 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-17565 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g24464 |