Basic Information
Locus ID:
Oco16G012870
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
IBR domain, a half RING-finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG16 | 18535721 | 18542526 | + | Oco16G012870 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.73 | 68,623.69 Da | 58.03 | 60.69 | -0.67 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16623 | RING-HC_RBR_TRIAD1_like | 152 | 202 | 1.0714E-12 | - |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 222 | 282 | 5.5E-14 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 299 | 347 | 5.8E-10 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 301 | 349 | 1.13E-17 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 147 | 230 | 3.29E-17 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 222 | 289 | 3.35E-12 | - |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 577 | 605 | 6.28E-7 | IPR036443 |
| Gene3D | G3DSA:1.20.120.1750 | - | 278 | 517 | 2.7E-84 | - |
| Gene3D | G3DSA:2.30.30.380 | - | 575 | 606 | 2.7E-8 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 146 | 236 | 2.0E-16 | IPR013083 |
| SMART | SM00647 | ibrneu5 | 221 | 282 | 4.2E-20 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 295 | 356 | 0.067 | IPR002867 |
| SMART | SM00547 | zf_4 | 580 | 604 | 0.0011 | IPR001876 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 152 | 198 | 8.963311 | IPR001841 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 578 | 606 | 8.320863 | IPR001876 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 148 | 360 | 47.960289 | IPR044066 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 582 | 601 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 70 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 542 | 560 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 542 | 575 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 56 | - | - |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G65430.1 | IBR domain-containing protein. | 0 |
| RefSeq | XP_015650118.1 | probable E3 ubiquitin-protein ligase ARI8 [Oryza sativa Japonica Group] | 0 |
| Q8W468 | Probable E3 ubiquitin-protein ligase ARI8 OS=Arabidopsis thaliana OX=3702 GN=ARI8 PE=2 SV=1 | 0 | |
| TrEMBL | Q69U96 | RBR-type E3 ubiquitin transferase OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0540300 PE=1 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology