Basic Information
Locus ID:
Oco16G012250
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Short Name:
UBP2
Description:
Ubiquitinyl hydrolase 1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG16 | 17891434 | 17895476 | - | Oco16G012250 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.83 | 58,761.88 Da | 43.78 | 78.13 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 298 | 424 | 4.5E-10 | IPR001394 |
| SUPERFAMILY | SSF57850 | RING/U-box | 182 | 266 | 2.47E-5 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 296 | 483 | 5.69E-32 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 288 | 498 | 1.7E-29 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 17 | 130 | 1.4E-5 | IPR013083 |
| ProSiteProfiles | PS50271 | Zinc finger UBP-type profile. | 207 | 267 | 11.446667 | IPR001607 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 297 | 529 | 16.570885 | IPR028889 |
| ProSiteProfiles | PS50271 | Zinc finger UBP-type profile. | 58 | 119 | 11.726387 | IPR001607 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 298 | 313 | - | IPR018200 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32780.1 | ubiquitin-specific protease 1. | 0 |
| RefSeq | XP_015648675.1 | ubiquitin carboxyl-terminal hydrolase 2 isoform X2 [Oryza sativa Japonica Group] | 0 |
| Q9FPT5 | Ubiquitin carboxyl-terminal hydrolase 1 OS=Arabidopsis thaliana OX=3702 GN=UBP1 PE=1 SV=2 | 0 | |
| TrEMBL | A2YXB7 | Ubiquitin carboxyl-terminal hydrolase OS=Oryza sativa subsp. indica OX=39946 GN=OsI_29983 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology