Basic Information
Locus ID:
Oco16G012240
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Short Name:
UBP2
Description:
Ubiquitinyl hydrolase 1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG16 | 17882369 | 17885371 | - | Oco16G012240 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.19 | 46,495.82 Da | 45.21 | 80.60 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 158 | 412 | 1.4E-20 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 144 | 416 | 7.85E-36 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 87 | 416 | 1.4E-33 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 1 | 415 | 19.57502 | IPR028889 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 350 | 368 | - | IPR018200 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32780.1 | ubiquitin-specific protease 1. | 0 |
| RefSeq | XP_015648981.1 | ubiquitin carboxyl-terminal hydrolase 2 [Oryza sativa Japonica Group] | 0 |
| Q9FPT5 | Ubiquitin carboxyl-terminal hydrolase 1 OS=Arabidopsis thaliana OX=3702 GN=UBP1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0E0LX62 | ubiquitinyl hydrolase 1 OS=Oryza punctata OX=4537 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology