Basic Information
Locus ID:
Oco16G012230
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Short Name:
UBP2
Description:
Ubiquitinyl hydrolase 1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG16 | 17863892 | 17869224 | - | Oco16G012230 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.91 | 49,783.06 Da | 47.87 | 93.17 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 250 | 344 | 3.3E-6 | IPR001394 |
| Pfam | PF02148 | Zn-finger in ubiquitin-hydrolases and other protein | 151 | 216 | 7.2E-6 | IPR001607 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 245 | 348 | 5.49E-19 | IPR038765 |
| SUPERFAMILY | SSF57850 | RING/U-box | 151 | 215 | 3.35E-5 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 99 | 222 | 8.3E-6 | IPR013083 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 233 | 366 | 6.7E-15 | - |
| ProSiteProfiles | PS50271 | Zinc finger UBP-type profile. | 146 | 218 | 13.097015 | IPR001607 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 249 | 455 | 12.164822 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 250 | 265 | - | IPR018200 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_015648956.1 | ubiquitin carboxyl-terminal hydrolase 1 [Oryza sativa Japonica Group] | 0 |
| TrEMBL | B7F7L1 | Os08g0527300 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0527300 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology