Basic Information
Locus ID:
Oco16G012220
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Short Name:
UBP2
Description:
Ubiquitinyl hydrolase 1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG16 | 17858590 | 17863068 | - | Oco16G012220 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.56 | 57,359.41 Da | 48.18 | 75.93 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 293 | 392 | 2.0E-17 | IPR001394 |
| Pfam | PF02148 | Zn-finger in ubiquitin-hydrolases and other protein | 87 | 149 | 1.6E-5 | IPR001607 |
| SUPERFAMILY | SSF57850 | RING/U-box | 78 | 148 | 2.47E-5 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 165 | 257 | 1.32E-6 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 289 | 453 | 6.28E-33 | IPR038765 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 47 | 163 | 6.5E-7 | IPR013083 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 284 | 464 | 8.9E-33 | - |
| ProSiteProfiles | PS50271 | Zinc finger UBP-type profile. | 80 | 152 | 12.476036 | IPR001607 |
| ProSiteProfiles | PS50271 | Zinc finger UBP-type profile. | 189 | 261 | 13.359951 | IPR001607 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 292 | 516 | 21.105698 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 293 | 308 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 50 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32780.1 | ubiquitin-specific protease 1. | 0 |
| RefSeq | XP_015648566.1 | ubiquitin carboxyl-terminal hydrolase 2 [Oryza sativa Japonica Group] | 0 |
| Q9FPT5 | Ubiquitin carboxyl-terminal hydrolase 1 OS=Arabidopsis thaliana OX=3702 GN=UBP1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0E0AXY0 | Ubiquitinyl hydrolase 1 OS=Oryza glumipatula OX=40148 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology