Basic Information
Locus ID:
Oco16G012210
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Prokaryotic RING finger family 4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG16 | 17856351 | 17858024 | - | Oco16G012210 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.84 | 26,702.91 Da | 48.22 | 83.36 | 0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16449 | RING-HC | 226 | 251 | 2.28821E-7 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 213 | 257 | 4.1E-10 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 213 | 258 | 6.85E-14 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 162 | 260 | 6.9E-12 | IPR013083 |
| SMART | SM00184 | ring_2 | 214 | 251 | 1.4E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 214 | 252 | 11.751628 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 229 | 238 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 115 | 153 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 173 | 202 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 173 | 187 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 127 | 141 | - | - |
| Coils | Coil | Coil | 148 | 168 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G13100.3 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_034601364.1 | E3 ubiquitin-protein ligase RNF123-like [Setaria viridis] | 0 |
| TrEMBL | A0A0D9XA10 | RING-type domain-containing protein OS=Leersia perrieri OX=77586 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology