Basic Information
Locus ID:
Oco16G012000
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
atbpm1,bpm1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG16 | 17646091 | 17647092 | - | Oco16G012000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.66 | 36,329.35 Da | 41.04 | 89.04 | 0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 38 | 134 | 2.597E-5 | IPR002083 |
| Pfam | PF00651 | BTB/POZ domain | 159 | 267 | 8.2E-24 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 145 | 268 | 2.16E-30 | IPR011333 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 34 | 137 | 2.78E-8 | - |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 141 | 265 | 9.0E-34 | IPR011333 |
| Gene3D | G3DSA:1.25.40.420 | - | 270 | 333 | 5.0E-12 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 25 | 138 | 1.8E-5 | IPR008974 |
| SMART | SM00225 | BTB_4 | 165 | 270 | 1.7E-22 | IPR000210 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 165 | 232 | 17.892975 | IPR000210 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G39760.1 | BTB/POZ/MATH-domains containing protein. | 0 |
| RefSeq | XP_025875702.1 | BTB/POZ and MATH domain-containing protein 1 [Oryza sativa Japonica Group] | 0 |
| O22286 | BTB/POZ and MATH domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=BPM3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0E0LX08 | BTB domain-containing protein OS=Oryza punctata OX=4537 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology