Basic Information
Locus ID:
Oco16G011990
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Speckle-type POZ protein-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG16 | 17639249 | 17639986 | - | Oco16G011990 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.18 | 26,669.83 Da | 53.84 | 83.96 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF54695 | POZ domain | 104 | 240 | 1.26E-7 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 97 | 144 | 2.3E-7 | IPR011333 |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_015649343.1 | BTB/POZ and MATH domain-containing protein 1 [Oryza sativa Japonica Group] | 0 |
| TrEMBL | A0A6G1CEE7 | BTB domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_001782 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Oryza coarctata | 2 | Oco15G010560, Oco16G011990 |