Basic Information
Locus ID:
Oco16G011830
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG16 | 17527159 | 17532943 | - | Oco16G011830 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.89 | 48,219.14 Da | 46.62 | 66.80 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12619 | RRM2_PUB1 | 155 | 229 | 9.41803E-51 | - |
| CDD | cd12354 | RRM3_TIA1_like | 278 | 352 | 6.3699E-30 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 156 | 226 | 3.2E-17 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 71 | 137 | 2.7E-12 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 280 | 346 | 3.6E-12 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 270 | 361 | 1.33E-21 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 67 | 235 | 1.36E-43 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 255 | 356 | 5.7E-22 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 153 | 250 | 2.4E-24 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 5 | 152 | 3.4E-25 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 70 | 139 | 1.6E-16 | IPR000504 |
| SMART | SM00361 | rrm2_1 | 155 | 228 | 0.58 | IPR003954 |
| SMART | SM00360 | rrm1_1 | 155 | 228 | 6.4E-22 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 279 | 348 | 4.2E-15 | IPR000504 |
| SMART | SM00361 | rrm2_1 | 279 | 348 | 3.2 | IPR003954 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 69 | 143 | 14.982202 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 278 | 352 | 15.476809 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 154 | 232 | 16.687742 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 250 | 273 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.1 | oligouridylate binding protein 1B. | 0 |
| RefSeq | XP_006659606.1 | RNA-binding protein 208 [Oryza brachyantha] | 0 |
| Q6YZW2 | RNA-binding protein 208 OS=Oryza sativa subsp. japonica OX=39947 GN=RBP-208 PE=1 SV=1 | 0 | |
| TrEMBL | J3MUH4 | Oligouridylate-binding protein 1B-like OS=Oryza brachyantha OX=4533 GN=102720169 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology